Analysis of interatomic Contacts of Structural Units in PDB entry:
5MBL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MBL entry

There are 3 chains in PDB entry 5MBL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 1SER 29
A
 TRP 31ASP 255
B
 HIS 256LEU 420
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5MBL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 12Right-handed alpha
Helix 2
AA2
A
15 20Right-handed 310
Helix 3
AA3
A
29 47Right-handed alpha
Helix 4
AA4
A
56 64Right-handed alpha
Helix 5
AA5
A
65 69Right-handed 310
Helix 6
AA6
A
70 74Right-handed 310
Helix 7
AA7
A
76 87Right-handed alpha
Helix 8
AA8
A
140 145Right-handed alpha
Helix 9
AA9
A
157 169Right-handed alpha
Helix 10
AB1
A
179 183Right-handed alpha
Helix 11
AB2
A
239 243Right-handed 310
Helix 12
AB3
B
262 274Right-handed alpha
Helix 13
AB4
B
276 286Right-handed alpha
Helix 14
AB5
B
299 305Right-handed alpha
Helix 15
AB6
B
308 318Right-handed alpha
Helix 16
AB7
B
331 339Right-handed alpha
Helix 17
AB8
B
341 351Right-handed alpha
Helix 18
AB9
B
364 373Right-handed alpha
Helix 19
AC1
B
374 384Right-handed alpha
Helix 20
AC2
B
397 405Right-handed alpha
Helix 21
AC3
B
407 420Right-handed alpha
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There are 3 sheets in PDB entry 5MBL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
196 210anti-parallel
Strand 3
A
171 178anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
196 210anti-parallel
Strand 3
A
213 219anti-parallel
Strand 4
A
231 235anti-parallel
Strand 5
A
188 189parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 153first strand
Strand 2
A
248 252anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il