Analysis of interatomic Contacts of Structural Units in PDB entry:
5MBM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MBM entry

There are 6 chains in PDB entry 5MBM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU -1SER 28
A
 TRP 30ASP 254
B
 LYS 0SER 28
B
 TRP 30ASP 254
C
 HIS 9ASN 171
D
 HIS 9ASN 171
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 5MBM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 11Right-handed alpha
Helix 2
AA2
A
14 19Right-handed alpha
Helix 3
AA3
A
28 46Right-handed alpha
Helix 4
AA4
A
55 63Right-handed alpha
Helix 5
AA5
A
64 68Right-handed 310
Helix 6
AA6
A
69 73Right-handed 310
Helix 7
AA7
A
75 87Right-handed alpha
Helix 8
AA8
A
139 144Right-handed alpha
Helix 9
AA9
A
156 168Right-handed alpha
Helix 10
AB1
A
238 242Right-handed 310
Helix 11
AB2
B
7 11Right-handed alpha
Helix 12
AB3
B
14 19Right-handed alpha
Helix 13
AB4
B
28 46Right-handed alpha
Helix 14
AB5
B
55 64Right-handed alpha
Helix 15
AB6
B
75 87Right-handed alpha
Helix 16
AB7
B
140 144Right-handed 310
Helix 17
AB8
B
156 167Right-handed alpha
Helix 18
AB9
B
224 229Right-handed alpha
Helix 19
AC1
B
238 242Right-handed 310
Helix 20
AC2
C
10 25Right-handed alpha
Helix 21
AC3
C
26 37Right-handed alpha
Helix 22
AC4
C
44 48Right-handed 310
Helix 23
AC5
C
49 55Right-handed alpha
Helix 24
AC6
C
58 68Right-handed alpha
Helix 25
AC7
C
81 90Right-handed alpha
Helix 26
AC8
C
91 101Right-handed alpha
Helix 27
AC9
C
114 121Right-handed alpha
Helix 28
AD1
C
124 134Right-handed alpha
Helix 29
AD2
C
147 155Right-handed alpha
Helix 30
AD3
C
157 171Right-handed alpha
Helix 31
AD4
D
10 25Right-handed alpha
Helix 32
AD5
D
26 38Right-handed alpha
Helix 33
AD6
D
49 56Right-handed alpha
Helix 34
AD7
D
58 68Right-handed alpha
Helix 35
AD8
D
81 90Right-handed alpha
Helix 36
AD9
D
91 100Right-handed alpha
Helix 37
AE1
D
114 123Right-handed alpha
Helix 38
AE2
D
124 133Right-handed alpha
Helix 39
AE3
D
147 155Right-handed alpha
Helix 40
AE4
D
157 171Right-handed alpha
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There are 4 sheets in PDB entry 5MBM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 152first strand
Strand 2
A
246 251anti-parallel
Strand 3
A
170 177anti-parallel
Strand 4
A
195 209anti-parallel
Strand 5
A
212 218anti-parallel
Strand 6
A
230 234anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 6first strand
Strand 2
B
201 209anti-parallel
Strand 3
B
212 218anti-parallel
Strand 4
B
230 233anti-parallel
Strand 5
B
187 188parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 6first strand
Strand 2
B
201 209anti-parallel
Strand 3
B
170 172anti-parallel
Strand 4
B
246 247anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 177first strand
Strand 2
B
195 198anti-parallel
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