Analysis of interatomic Contacts of Structural Units in PDB entry:
5MBS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MBS entry

There is 1 chain in PDB entry 5MBS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3ARG 435
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5MBS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 23Right-handed alpha
Helix 2
AA2
A
72 83Right-handed alpha
Helix 3
AA3
A
97 108Right-handed alpha
Helix 4
AA4
A
130 137Right-handed alpha
Helix 5
AA5
A
151 164Right-handed alpha
Helix 6
AA6
A
187 197Right-handed alpha
Helix 7
AA7
A
230 235Right-handed alpha
Helix 8
AA8
A
243 258Right-handed alpha
Helix 9
AA9
A
272 286Right-handed alpha
Helix 10
AB1
A
305 317Right-handed alpha
Helix 11
AB2
A
339 352Right-handed alpha
Helix 12
AB3
A
355 370Right-handed alpha
Helix 13
AB4
A
401 405Right-handed 310
Helix 14
AB5
A
406 422Right-handed alpha
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There are 5 sheets in PDB entry 5MBS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 9first strand
Strand 2
A
85 91parallel
Strand 3
A
114 119parallel
Strand 4
A
141 144parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 44first strand
Strand 2
A
54 56anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 202first strand
Strand 2
A
216 220anti-parallel
Strand 3
A
224 227anti-parallel
Strand 4
A
177 181parallel
Strand 5
A
260 266parallel
Strand 6
A
288 294parallel
Strand 7
A
325 326parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 375first strand
Strand 2
A
378 379anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 389first strand
Strand 2
A
394 399anti-parallel
Strand 3
A
429 434parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il