Analysis of interatomic Contacts of Structural Units in PDB entry:
5MBU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MBU entry

There are 3 chains in PDB entry 5MBU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 22	LYS 310
B	LEU 24	LYS 310
C	MET 23	LYS 310

There are 47 helices in PDB entry 5MBU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	57	67	Right-handed alpha
Helix 2	AA2	A	69	71	Right-handed 310
Helix 3	AA3	A	82	89	Right-handed 310
Helix 4	AA4	A	101	109	Right-handed alpha
Helix 5	AA5	A	116	121	Right-handed 310
Helix 6	AA6	A	122	128	Right-handed alpha
Helix 7	AA7	A	141	157	Right-handed alpha
Helix 8	AA8	A	159	179	Right-handed alpha
Helix 9	AA9	A	207	212	Right-handed alpha
Helix 10	AB1	A	232	240	Right-handed alpha
Helix 11	AB2	A	258	263	Right-handed alpha
Helix 12	AB3	A	265	270	Right-handed alpha
Helix 13	AB4	A	271	276	Right-handed alpha
Helix 14	AB5	A	283	288	Right-handed alpha
Helix 15	AB6	A	294	310	Right-handed alpha
Helix 16	AB7	B	57	67	Right-handed alpha
Helix 17	AB8	B	69	71	Right-handed 310
Helix 18	AB9	B	82	89	Right-handed 310
Helix 19	AC1	B	101	109	Right-handed alpha
Helix 20	AC2	B	116	121	Right-handed 310
Helix 21	AC3	B	122	128	Right-handed alpha
Helix 22	AC4	B	141	157	Right-handed alpha
Helix 23	AC5	B	159	181	Right-handed alpha
Helix 24	AC6	B	207	212	Right-handed alpha
Helix 25	AC7	B	232	240	Right-handed alpha
Helix 26	AC8	B	249	254	Right-handed alpha
Helix 27	AC9	B	258	263	Right-handed alpha
Helix 28	AD1	B	265	271	Right-handed alpha
Helix 29	AD2	B	271	276	Right-handed alpha
Helix 30	AD3	B	283	288	Right-handed alpha
Helix 31	AD4	B	296	310	Right-handed alpha
Helix 32	AD5	C	57	67	Right-handed alpha
Helix 33	AD6	C	69	71	Right-handed 310
Helix 34	AD7	C	82	89	Right-handed 310
Helix 35	AD8	C	101	109	Right-handed alpha
Helix 36	AD9	C	116	121	Right-handed 310
Helix 37	AE1	C	122	130	Right-handed alpha
Helix 38	AE2	C	141	157	Right-handed alpha
Helix 39	AE3	C	159	179	Right-handed alpha
Helix 40	AE4	C	207	212	Right-handed alpha
Helix 41	AE5	C	232	240	Right-handed alpha
Helix 42	AE6	C	249	253	Right-handed alpha
Helix 43	AE7	C	258	263	Right-handed alpha
Helix 44	AE8	C	265	271	Right-handed alpha
Helix 45	AE9	C	271	276	Right-handed alpha
Helix 46	AF1	C	283	288	Right-handed alpha
Helix 47	AF2	C	296	310	Right-handed alpha

There are 12 sheets in PDB entry 5MBU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	30	first strand
Strand 2	A	34	39	anti-parallel
Strand 3	A	42	47	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	75	first strand
Strand 2	A	53	55	parallel
Strand 3	A	112	115	parallel
Strand 4	A	132	134	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	217	first strand
Strand 2	A	186	193	parallel
Strand 3	A	196	200	anti-parallel
Strand 4	A	229	231	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	217	first strand
Strand 2	A	186	193	parallel
Strand 3	A	243	248	parallel
Strand 4	A	279	282	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	30	first strand
Strand 2	B	34	39	anti-parallel
Strand 3	B	42	47	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	75	first strand
Strand 2	B	53	55	parallel
Strand 3	B	112	115	parallel
Strand 4	B	132	134	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	217	first strand
Strand 2	B	186	193	parallel
Strand 3	B	196	200	anti-parallel
Strand 4	B	229	231	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	217	first strand
Strand 2	B	186	193	parallel
Strand 3	B	243	248	parallel
Strand 4	B	279	282	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	34	39	anti-parallel
Strand 3	C	42	47	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	75	first strand
Strand 2	C	53	55	parallel
Strand 3	C	112	115	parallel
Strand 4	C	132	134	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	216	217	first strand
Strand 2	C	186	193	parallel
Strand 3	C	196	200	anti-parallel
Strand 4	C	229	231	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	216	217	first strand
Strand 2	C	186	193	parallel
Strand 3	C	243	248	parallel
Strand 4	C	279	281	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MBU

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MBU