Analysis of interatomic Contacts of Structural Units in PDB entry:
5MBW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MBW entry

There are 4 chains in PDB entry 5MBW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 58ILE 447
B
 GLU 668ASN 670
B
 VAL 672GLU 674
B
 LYS 676LYS 676
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5MBW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
60 64Right-handed 310
Helix 2
AA2
A
114 118Right-handed 310
Helix 3
AA3
A
184 188Right-handed 310
Helix 4
AA4
A
196 205Right-handed alpha
Helix 5
AA5
A
223 230Right-handed alpha
Helix 6
AA6
A
241 243Right-handed 310
Helix 7
AA7
A
277 283Right-handed 310
Helix 8
AA8
A
299 313Right-handed alpha
Helix 9
AA9
A
319 324Right-handed alpha
Helix 10
AB1
A
362 366Right-handed alpha
Helix 11
AB2
A
395 400Right-handed alpha
Helix 12
AB3
A
408 410Right-handed 310
Helix 13
AB4
A
440 444Right-handed 310
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There are 7 sheets in PDB entry 5MBW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 70first strand
Strand 2
A
74 81anti-parallel
Strand 3
A
86 93anti-parallel
Strand 4
A
178 181parallel
Strand 5
A
99 102anti-parallel
Strand 6
A
156 167parallel
Strand 7
A
136 147anti-parallel
Strand 8
A
122 131anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 70first strand
Strand 2
A
74 81anti-parallel
Strand 3
A
136 147anti-parallel
Strand 4
A
122 131anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 237first strand
Strand 2
A
211 215anti-parallel
Strand 3
A
402 407anti-parallel
Strand 4
A
412 418anti-parallel
Strand 5
A
245 253anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 273first strand
Strand 2
A
264 269anti-parallel
Strand 3
A
344 349anti-parallel
Strand 4
A
355 361anti-parallel
Strand 5
A
430 436anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 288first strand
Strand 2
A
392 394parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 298first strand
Strand 2
A
385 388parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 332first strand
Strand 2
A
378 383anti-parallel
Strand 3
A
367 370anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il