Analysis of interatomic Contacts of Structural Units in PDB entry:
5MC9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MC9 entry

There are 3 chains in PDB entry 5MC9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2083MET 2687
B
 LYS 1736LEU 1786
C
 ASP 1553ARG 1564
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5MC9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2089 2091Right-handed 310
Helix 2
AA2
A
2092 2123Right-handed alpha
Helix 3
AA3
A
2617 2621Right-handed 310
Helix 4
AA4
A
2665 2669Right-handed 310
Helix 5
AA5
B
1738 1785Right-handed alpha
Helix 6
AA6
C
1554 1594Right-handed alpha
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There are 7 sheets in PDB entry 5MC9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2237 2240first strand
Strand 2
A
2220 2227anti-parallel
Strand 3
A
2210 2217anti-parallel
Strand 4
A
2147 2155anti-parallel
Strand 5
A
2284 2285anti-parallel
Strand 6
A
2288 2289anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2237 2240first strand
Strand 2
A
2220 2227anti-parallel
Strand 3
A
2210 2217anti-parallel
Strand 4
A
2147 2155anti-parallel
Strand 5
A
2277 2280anti-parallel
Strand 6
A
2127 2131anti-parallel
Strand 7
A
2303 2305anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2194 2199first strand
Strand 2
A
2183 2189anti-parallel
Strand 3
A
2174 2180anti-parallel
Strand 4
A
2161 2167anti-parallel
Strand 5
A
2255 2257anti-parallel
Strand 6
A
2135 2138anti-parallel
Strand 7
A
2297 2299anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2381 2385first strand
Strand 2
A
2370 2376anti-parallel
Strand 3
A
2361 2367anti-parallel
Strand 4
A
2348 2353anti-parallel
Strand 5
A
2442 2444anti-parallel
Strand 6
A
2316 2326anti-parallel
Strand 7
A
2463 2471anti-parallel
Strand 8
A
2474 2475anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2416 2426first strand
Strand 2
A
2406 2413anti-parallel
Strand 3
A
2396 2403anti-parallel
Strand 4
A
2334 2342anti-parallel
Strand 5
A
2463 2471anti-parallel
Strand 6
A
2316 2326anti-parallel
Strand 7
A
2482 2487anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2574 2578first strand
Strand 2
A
2560 2566anti-parallel
Strand 3
A
2551 2557anti-parallel
Strand 4
A
2529 2535anti-parallel
Strand 5
A
2629 2632anti-parallel
Strand 6
A
2496 2507anti-parallel
Strand 7
A
2652 2659anti-parallel
Strand 8
A
2662 2663anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2612 2615first strand
Strand 2
A
2601 2606anti-parallel
Strand 3
A
2591 2598anti-parallel
Strand 4
A
2517 2524anti-parallel
Strand 5
A
2652 2659anti-parallel
Strand 6
A
2496 2507anti-parallel
Strand 7
A
2671 2677anti-parallel
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