Analysis of interatomic Contacts of Structural Units in PDB entry:
5MCP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MCP entry

There are 2 chains in PDB entry 5MCP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLU 507
B	HIS 0	ALA 242

There are160 helices in PDB entry 5MCP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	7	Right-handed 310
Helix 2	AA2	A	8	13	Right-handed alpha
Helix 3	AA3	A	14	16	Right-handed 310
Helix 4	AA4	A	23	28	Right-handed alpha
Helix 5	AA5	A	37	39	Right-handed 310
Helix 6	AA6	A	51	55	Right-handed 310
Helix 7	AA7	A	81	91	Right-handed alpha
Helix 8	AA8	A	102	116	Right-handed alpha
Helix 9	AA9	A	132	143	Right-handed alpha
Helix 10	AB1	A	178	183	Right-handed alpha
Helix 11	AB2	A	195	207	Right-handed alpha
Helix 12	AB3	A	226	231	Right-handed alpha
Helix 13	AB4	A	257	269	Right-handed alpha
Helix 14	AB5	A	283	297	Right-handed alpha
Helix 15	AB6	A	309	319	Right-handed alpha
Helix 16	AB7	A	345	358	Right-handed alpha
Helix 17	AB8	A	359	361	Right-handed 310
Helix 18	AB9	A	372	382	Right-handed alpha
Helix 19	AC1	A	459	479	Right-handed alpha
Helix 20	AC2	A	482	492	Right-handed alpha
Helix 21	AC3	B	5	7	Right-handed 310
Helix 22	AC4	B	8	13	Right-handed alpha
Helix 23	AC5	B	14	16	Right-handed 310
Helix 24	AC6	B	23	28	Right-handed alpha
Helix 25	AC7	B	37	39	Right-handed 310
Helix 26	AC8	B	51	55	Right-handed 310
Helix 27	AC9	B	81	91	Right-handed alpha
Helix 28	AD1	B	102	116	Right-handed alpha
Helix 29	AD2	B	132	144	Right-handed alpha
Helix 30	AD3	B	165	170	Right-handed alpha
Helix 31	AD4	B	179	183	Right-handed alpha
Helix 32	AD5	B	195	207	Right-handed alpha
Helix 33	AD6	B	226	231	Right-handed alpha
Helix 34	AD7	B	257	269	Right-handed alpha
Helix 35	AD8	B	283	297	Right-handed alpha
Helix 36	AD9	B	309	319	Right-handed alpha
Helix 37	AE1	B	345	358	Right-handed alpha
Helix 38	AE2	B	359	361	Right-handed 310
Helix 39	AE3	B	372	382	Right-handed alpha
Helix 40	AE4	B	459	479	Right-handed alpha
Helix 41	AE5	B	482	492	Right-handed alpha
Helix 42	AE6	B	501	507	Right-handed alpha
Helix 43	AE7	C	5	7	Right-handed 310
Helix 44	AE8	C	8	13	Right-handed alpha
Helix 45	AE9	C	14	16	Right-handed 310
Helix 46	AF1	C	23	28	Right-handed alpha
Helix 47	AF2	C	29	34	Right-handed alpha
Helix 48	AF3	C	37	39	Right-handed 310
Helix 49	AF4	C	51	55	Right-handed 310
Helix 50	AF5	C	81	91	Right-handed alpha
Helix 51	AF6	C	102	116	Right-handed alpha
Helix 52	AF7	C	132	144	Right-handed alpha
Helix 53	AF8	C	165	170	Right-handed alpha
Helix 54	AF9	C	178	183	Right-handed alpha
Helix 55	AG1	C	195	207	Right-handed alpha
Helix 56	AG2	C	226	231	Right-handed alpha
Helix 57	AG3	C	257	269	Right-handed alpha
Helix 58	AG4	C	283	297	Right-handed alpha
Helix 59	AG5	C	309	319	Right-handed alpha
Helix 60	AG6	C	345	360	Right-handed alpha
Helix 61	AG7	C	372	382	Right-handed alpha
Helix 62	AG8	C	459	479	Right-handed alpha
Helix 63	AG9	C	482	492	Right-handed alpha
Helix 64	AH1	C	501	507	Right-handed alpha
Helix 65	AH2	D	5	7	Right-handed 310
Helix 66	AH3	D	8	13	Right-handed alpha
Helix 67	AH4	D	14	16	Right-handed 310
Helix 68	AH5	D	23	28	Right-handed alpha
Helix 69	AH6	D	29	34	Right-handed alpha
Helix 70	AH7	D	37	39	Right-handed 310
Helix 71	AH8	D	51	55	Right-handed 310
Helix 72	AH9	D	81	91	Right-handed alpha
Helix 73	AI1	D	102	116	Right-handed alpha
Helix 74	AI2	D	132	143	Right-handed alpha
Helix 75	AI3	D	165	170	Right-handed alpha
Helix 76	AI4	D	178	183	Right-handed alpha
Helix 77	AI5	D	195	207	Right-handed alpha
Helix 78	AI6	D	226	231	Right-handed alpha
Helix 79	AI7	D	257	268	Right-handed alpha
Helix 80	AI8	D	283	297	Right-handed alpha
Helix 81	AI9	D	309	319	Right-handed alpha
Helix 82	AJ1	D	345	358	Right-handed alpha
Helix 83	AJ2	D	359	361	Right-handed 310
Helix 84	AJ3	D	372	382	Right-handed alpha
Helix 85	AJ4	D	459	479	Right-handed alpha
Helix 86	AJ5	D	482	492	Right-handed alpha
Helix 87	AJ6	D	501	507	Right-handed alpha
Helix 88	AJ7	E	5	7	Right-handed 310
Helix 89	AJ8	E	8	13	Right-handed alpha
Helix 90	AJ9	E	14	16	Right-handed 310
Helix 91	AK1	E	23	28	Right-handed alpha
Helix 92	AK2	E	37	41	Right-handed 310
Helix 93	AK3	E	51	55	Right-handed 310
Helix 94	AK4	E	81	91	Right-handed alpha
Helix 95	AK5	E	102	114	Right-handed alpha
Helix 96	AK6	E	134	144	Right-handed alpha
Helix 97	AK7	E	165	170	Right-handed alpha
Helix 98	AK8	E	195	207	Right-handed alpha
Helix 99	AK9	E	260	269	Right-handed alpha
Helix 100	AL1	E	283	297	Right-handed alpha
Helix 101	AL2	E	309	320	Right-handed alpha
Helix 102	AL3	E	345	358	Right-handed alpha
Helix 103	AL4	E	359	361	Right-handed 310
Helix 104	AL5	E	372	383	Right-handed alpha
Helix 105	AL6	E	389	394	Right-handed alpha
Helix 106	AL7	E	459	479	Right-handed alpha
Helix 107	AL8	E	482	492	Right-handed alpha
Helix 108	AL9	F	5	7	Right-handed 310
Helix 109	AM1	F	8	16	Right-handed alpha
Helix 110	AM2	F	23	28	Right-handed alpha
Helix 111	AM3	F	37	41	Right-handed 310
Helix 112	AM4	F	81	90	Right-handed alpha
Helix 113	AM5	F	102	115	Right-handed alpha
Helix 114	AM6	F	134	143	Right-handed alpha
Helix 115	AM7	F	165	170	Right-handed alpha
Helix 116	AM8	F	197	207	Right-handed alpha
Helix 117	AM9	F	256	269	Right-handed alpha
Helix 118	AN1	F	283	297	Right-handed alpha
Helix 119	AN2	F	309	320	Right-handed alpha
Helix 120	AN3	F	345	358	Right-handed alpha
Helix 121	AN4	F	359	361	Right-handed 310
Helix 122	AN5	F	372	383	Right-handed alpha
Helix 123	AN6	F	465	479	Right-handed alpha
Helix 124	AN7	F	484	492	Right-handed alpha
Helix 125	AN8	G	5	7	Right-handed 310
Helix 126	AN9	G	8	13	Right-handed alpha
Helix 127	AO1	G	14	16	Right-handed 310
Helix 128	AO2	G	23	28	Right-handed alpha
Helix 129	AO3	G	37	39	Right-handed 310
Helix 130	AO4	G	51	55	Right-handed 310
Helix 131	AO5	G	81	92	Right-handed alpha
Helix 132	AO6	G	102	116	Right-handed alpha
Helix 133	AO7	G	132	144	Right-handed alpha
Helix 134	AO8	G	165	170	Right-handed alpha
Helix 135	AO9	G	197	207	Right-handed alpha
Helix 136	AP1	G	257	269	Right-handed alpha
Helix 137	AP2	G	283	297	Right-handed alpha
Helix 138	AP3	G	309	320	Right-handed alpha
Helix 139	AP4	G	345	358	Right-handed alpha
Helix 140	AP5	G	359	361	Right-handed 310
Helix 141	AP6	G	372	383	Right-handed alpha
Helix 142	AP7	G	459	479	Right-handed alpha
Helix 143	AP8	G	482	492	Right-handed alpha
Helix 144	AP9	H	5	7	Right-handed 310
Helix 145	AQ1	H	8	16	Right-handed alpha
Helix 146	AQ2	H	23	28	Right-handed alpha
Helix 147	AQ3	H	37	41	Right-handed 310
Helix 148	AQ4	H	81	91	Right-handed alpha
Helix 149	AQ5	H	103	115	Right-handed alpha
Helix 150	AQ6	H	133	143	Right-handed alpha
Helix 151	AQ7	H	165	170	Right-handed alpha
Helix 152	AQ8	H	202	207	Right-handed alpha
Helix 153	AQ9	H	261	269	Right-handed alpha
Helix 154	AR1	H	285	297	Right-handed alpha
Helix 155	AR2	H	309	319	Right-handed alpha
Helix 156	AR3	H	345	358	Right-handed alpha
Helix 157	AR4	H	359	361	Right-handed 310
Helix 158	AR5	H	372	383	Right-handed alpha
Helix 159	AR6	H	464	479	Right-handed alpha
Helix 160	AR7	H	482	493	Right-handed alpha

There are 35 sheets in PDB entry 5MCP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	43	first strand
Strand 2	A	497	499	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	60	first strand
Strand 2	A	66	67	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	73	first strand
Strand 2	A	94	97	parallel
Strand 3	A	250	253	parallel
Strand 4	A	273	276	parallel
Strand 5	A	301	307	parallel
Strand 6	A	323	326	parallel
Strand 7	A	364	367	parallel
Strand 8	A	386	389	parallel
Strand 9	A	71	73	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	151	first strand
Strand 2	A	160	164	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	191	first strand
Strand 2	A	210	214	parallel
Strand 3	A	220	225	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	43	first strand
Strand 2	B	497	499	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	60	first strand
Strand 2	B	66	67	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	73	first strand
Strand 2	B	94	97	parallel
Strand 3	B	250	253	parallel
Strand 4	B	273	276	parallel
Strand 5	B	301	307	parallel
Strand 6	B	323	326	parallel
Strand 7	B	364	367	parallel
Strand 8	B	386	389	parallel
Strand 9	B	71	73	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	151	first strand
Strand 2	B	160	164	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	190	191	first strand
Strand 2	B	210	214	parallel
Strand 3	B	220	225	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	43	first strand
Strand 2	C	497	499	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	60	first strand
Strand 2	C	66	67	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	73	first strand
Strand 2	C	94	97	parallel
Strand 3	C	250	253	parallel
Strand 4	C	273	276	parallel
Strand 5	C	301	307	parallel
Strand 6	C	323	326	parallel
Strand 7	C	364	367	parallel
Strand 8	C	386	389	parallel
Strand 9	C	71	73	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	151	first strand
Strand 2	C	160	164	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	190	191	first strand
Strand 2	C	210	214	parallel
Strand 3	C	220	225	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	43	first strand
Strand 2	D	497	499	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	60	first strand
Strand 2	D	66	67	anti-parallel

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There are 9 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	73	first strand
Strand 2	D	94	97	parallel
Strand 3	D	250	253	parallel
Strand 4	D	273	276	parallel
Strand 5	D	301	307	parallel
Strand 6	D	323	326	parallel
Strand 7	D	364	367	parallel
Strand 8	D	386	389	parallel
Strand 9	D	71	73	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	148	151	first strand
Strand 2	D	160	164	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	190	191	first strand
Strand 2	D	210	214	parallel
Strand 3	D	220	225	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	42	43	first strand
Strand 2	E	497	498	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	59	60	first strand
Strand 2	E	66	67	anti-parallel

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There are 9 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	71	73	first strand
Strand 2	E	94	97	parallel
Strand 3	E	250	253	parallel
Strand 4	E	273	276	parallel
Strand 5	E	301	307	parallel
Strand 6	E	323	326	parallel
Strand 7	E	364	366	parallel
Strand 8	E	386	388	parallel
Strand 9	E	71	73	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	210	211	first strand
Strand 2	E	224	225	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	42	43	first strand
Strand 2	F	497	498	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	59	60	first strand
Strand 2	F	66	67	anti-parallel

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There are 8 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	71	73	first strand
Strand 2	F	386	389	parallel
Strand 3	F	364	366	parallel
Strand 4	F	323	326	parallel
Strand 5	F	301	307	parallel
Strand 6	F	273	276	parallel
Strand 7	F	250	253	parallel
Strand 8	F	96	97	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	41	43	first strand
Strand 2	G	497	499	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	59	60	first strand
Strand 2	G	66	67	anti-parallel

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There are 9 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	71	73	first strand
Strand 2	G	94	97	parallel
Strand 3	G	250	253	parallel
Strand 4	G	273	276	parallel
Strand 5	G	301	307	parallel
Strand 6	G	323	326	parallel
Strand 7	G	364	366	parallel
Strand 8	G	386	388	parallel
Strand 9	G	71	73	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	148	150	first strand
Strand 2	G	162	164	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	42	43	first strand
Strand 2	H	497	498	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	59	60	first strand
Strand 2	H	66	67	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	94	95	first strand
Strand 2	H	72	73	parallel
Strand 3	H	388	389	parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	303	307	first strand
Strand 2	H	323	326	parallel
Strand 3	H	364	366	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MCP

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MCP