Analysis of interatomic Contacts of Structural Units in PDB entry:
5MCQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MCQ entry

There are 5 chains in PDB entry 5MCQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 56PRO 448
D
 GLY 655PRO 663
D
 GLY 665GLY 665
D
 GLY 667ASN 670
D
 VAL 672GLU 674
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 5MCQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 64Right-handed alpha
Helix 2
AA2
A
114 118Right-handed 310
Helix 3
AA3
A
184 188Right-handed 310
Helix 4
AA4
A
196 205Right-handed alpha
Helix 5
AA5
A
218 220Right-handed 310
Helix 6
AA6
A
241 243Right-handed 310
Helix 7
AA7
A
277 283Right-handed 310
Helix 8
AA8
A
299 314Right-handed alpha
Helix 9
AA9
A
319 324Right-handed alpha
Helix 10
AB1
A
337 341Right-handed 310
Helix 11
AB2
A
362 366Right-handed alpha
Helix 12
AB3
A
395 400Right-handed alpha
Helix 13
AB4
A
439 444Right-handed 310
Back to top of page

There are 5 sheets in PDB entry 5MCQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 131first strand
Strand 2
A
136 147anti-parallel
Strand 3
A
75 81anti-parallel
Strand 4
A
67 70anti-parallel
Strand 5
A
230 237anti-parallel
Strand 6
A
211 217anti-parallel
Strand 7
A
402 407anti-parallel
Strand 8
A
412 418anti-parallel
Strand 9
A
245 253anti-parallel
Back to list of sheets
Back to top of page

There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 131first strand
Strand 2
A
136 147anti-parallel
Strand 3
A
156 167anti-parallel
Strand 4
A
99 102parallel
Strand 5
A
178 181anti-parallel
Strand 6
A
86 93parallel
Strand 7
A
75 81anti-parallel
Strand 8
A
67 70anti-parallel
Strand 9
A
230 237anti-parallel
Strand 10
A
211 217anti-parallel
Strand 11
A
402 407anti-parallel
Strand 12
A
412 418anti-parallel
Strand 13
A
245 253anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 273first strand
Strand 2
A
264 269anti-parallel
Strand 3
A
344 349anti-parallel
Strand 4
A
355 361anti-parallel
Strand 5
A
430 436anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 288first strand
Strand 2
A
392 394parallel
Strand 3
A
295 298anti-parallel
Strand 4
A
385 388parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
367 370first strand
Strand 2
A
378 383anti-parallel
Strand 3
A
327 332anti-parallel
Strand 4
D
660 663anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il