Analysis of interatomic Contacts of Structural Units in PDB entry:
5MDD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MDD entry

There are 14 chains in PDB entry 5MDD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 148VAL 221
B
 THR 148VAL 221
F
 THR 148VAL 221
W
 THR 148VAL 221
a
 PRO 1PRO 147
b
 PRO 1PRO 147
f
 PRO 1PRO 147
C
 THR 148VAL 221
D
 THR 148VAL 221
E
 THR 148VAL 221
G
 THR 148VAL 221
H
 PRO 1PRO 147
I
 PRO 1PRO 147
J
 PRO 1PRO 147
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 82 helices in PDB entry 5MDD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
149 153Right-handed 310
Helix 2
AA2
A
160 175Right-handed alpha
Helix 3
AA3
A
178 193Right-handed alpha
Helix 4
AA4
A
195 205Right-handed alpha
Helix 5
AA5
A
210 218Right-handed alpha
Helix 6
AA6
B
149 153Right-handed 310
Helix 7
AA7
B
160 175Right-handed alpha
Helix 8
AA8
B
178 193Right-handed alpha
Helix 9
AA9
B
195 205Right-handed alpha
Helix 10
AB1
B
210 218Right-handed alpha
Helix 11
AB2
F
149 153Right-handed 310
Helix 12
AB3
F
160 175Right-handed alpha
Helix 13
AB4
F
178 193Right-handed alpha
Helix 14
AB5
F
195 205Right-handed alpha
Helix 15
AB6
F
210 218Right-handed alpha
Helix 16
AB7
W
149 153Right-handed 310
Helix 17
AB8
W
160 175Right-handed alpha
Helix 18
AB9
W
178 193Right-handed alpha
Helix 19
AC1
W
195 205Right-handed alpha
Helix 20
AC2
W
210 218Right-handed alpha
Helix 21
AC3
a
16 31Right-handed alpha
Helix 22
AC4
a
35 44Right-handed alpha
Helix 23
AC5
a
48 58Right-handed alpha
Helix 24
AC6
a
62 84Right-handed alpha
Helix 25
AC7
a
100 105Right-handed alpha
Helix 26
AC8
a
110 120Right-handed alpha
Helix 27
AC9
a
125 146Right-handed alpha
Helix 28
AD1
b
16 31Right-handed alpha
Helix 29
AD2
b
35 44Right-handed alpha
Helix 30
AD3
b
48 58Right-handed alpha
Helix 31
AD4
b
62 84Right-handed alpha
Helix 32
AD5
b
100 105Right-handed alpha
Helix 33
AD6
b
110 120Right-handed alpha
Helix 34
AD7
b
125 146Right-handed alpha
Helix 35
AD8
f
16 31Right-handed alpha
Helix 36
AD9
f
35 44Right-handed alpha
Helix 37
AE1
f
48 58Right-handed alpha
Helix 38
AE2
f
62 84Right-handed alpha
Helix 39
AE3
f
100 105Right-handed alpha
Helix 40
AE4
f
110 120Right-handed alpha
Helix 41
AE5
f
125 146Right-handed alpha
Helix 42
AE6
C
149 153Right-handed 310
Helix 43
AE7
C
160 175Right-handed alpha
Helix 44
AE8
C
178 193Right-handed alpha
Helix 45
AE9
C
195 205Right-handed alpha
Helix 46
AF1
C
210 218Right-handed alpha
Helix 47
AF2
D
149 153Right-handed 310
Helix 48
AF3
D
160 175Right-handed alpha
Helix 49
AF4
D
178 193Right-handed alpha
Helix 50
AF5
D
195 205Right-handed alpha
Helix 51
AF6
D
210 218Right-handed alpha
Helix 52
AF7
E
149 153Right-handed 310
Helix 53
AF8
E
160 175Right-handed alpha
Helix 54
AF9
E
178 193Right-handed alpha
Helix 55
AG1
E
195 205Right-handed alpha
Helix 56
AG2
E
210 218Right-handed alpha
Helix 57
AG3
G
149 153Right-handed 310
Helix 58
AG4
G
160 175Right-handed alpha
Helix 59
AG5
G
178 193Right-handed alpha
Helix 60
AG6
G
195 205Right-handed alpha
Helix 61
AG7
G
210 218Right-handed alpha
Helix 62
AG8
H
16 31Right-handed alpha
Helix 63
AG9
H
35 44Right-handed alpha
Helix 64
AH1
H
48 58Right-handed alpha
Helix 65
AH2
H
62 84Right-handed alpha
Helix 66
AH3
H
100 105Right-handed alpha
Helix 67
AH4
H
110 120Right-handed alpha
Helix 68
AH5
H
125 146Right-handed alpha
Helix 69
AH6
I
16 31Right-handed alpha
Helix 70
AH7
I
35 44Right-handed alpha
Helix 71
AH8
I
48 58Right-handed alpha
Helix 72
AH9
I
62 84Right-handed alpha
Helix 73
AI1
I
100 105Right-handed alpha
Helix 74
AI2
I
110 120Right-handed alpha
Helix 75
AI3
I
125 146Right-handed alpha
Helix 76
AI4
J
16 31Right-handed alpha
Helix 77
AI5
J
35 44Right-handed alpha
Helix 78
AI6
J
48 58Right-handed alpha
Helix 79
AI7
J
62 84Right-handed alpha
Helix 80
AI8
J
100 105Right-handed alpha
Helix 81
AI9
J
110 120Right-handed alpha
Helix 82
AJ1
J
125 146Right-handed alpha
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There are 6 sheets in PDB entry 5MDD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
2 4first strand
Strand 2
a
10 12anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
2 4first strand
Strand 2
b
10 12anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
f
2 4first strand
Strand 2
f
10 12anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
2 4first strand
Strand 2
H
10 12anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
2 4first strand
Strand 2
I
10 12anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
2 4first strand
Strand 2
J
10 12anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il