Analysis of interatomic Contacts of Structural Units in PDB entry:
5MDH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MDH entry

There are 2 chains in PDB entry 5MDH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1ALA 333
B
 SER 1ALA 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 27 helices in PDB entry 5MDH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 18Right-handed alpha
Helix 2
2
A
20 24Right-handed alpha
Helix 3
3
A
43 59Right-handed 310
Helix 4
4
A
73 76Right-handed alpha
Helix 5
5
A
101 118Right-handed alpha
Helix 6
6
A
132 142Right-handed alpha
Helix 7
7
A
148 150Right-handed 310
Helix 8
8
A
156 170Right-handed alpha
Helix 9
9
A
174 176Right-handed 310
Helix 10
10
A
208 212Right-handed alpha
Helix 11
11
A
215 219Right-handed alpha
Helix 12
12
A
221 237Right-handed alpha
Helix 13
13
A
243 258Right-handed alpha
Helix 14
14
A
306 331Right-handed alpha
Helix 15
15
B
15 24Right-handed alpha
Helix 16
16
B
43 59Right-handed 310
Helix 17
17
B
73 76Right-handed alpha
Helix 18
18
B
101 118Right-handed alpha
Helix 19
19
B
132 141Right-handed alpha
Helix 20
20
B
148 150Right-handed 310
Helix 21
21
B
156 170Right-handed alpha
Helix 22
22
B
174 176Right-handed 310
Helix 23
23
B
208 212Right-handed alpha
Helix 24
24
B
215 219Right-handed alpha
Helix 25
25
B
221 237Right-handed alpha
Helix 26
26
B
242 258Right-handed alpha
Helix 27
27
B
306 331Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 5MDH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 153first strand
Strand 2
A
124 127parallel
Strand 3
A
82 85parallel
Strand 4
A
4 8parallel
Strand 5
A
35 40parallel
Strand 6
A
64 70parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 183first strand
Strand 2
A
191 193anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 200first strand
Strand 2
A
205 207anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 271first strand
Strand 2
A
284 292anti-parallel
Strand 3
A
295 298anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 153first strand
Strand 2
B
124 127parallel
Strand 3
B
82 85parallel
Strand 4
B
4 9parallel
Strand 5
B
35 40parallel
Strand 6
B
64 70parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
181 183first strand
Strand 2
B
191 193anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
266 271first strand
Strand 2
B
284 292anti-parallel
Strand 3
B
295 298anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il