Analysis of interatomic Contacts of Structural Units in PDB entry:
5MDM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MDM entry

There are 4 chains in PDB entry 5MDM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	TYR 1	ASP 410
F	TYR 1	GLU 405
A	TYR 1	ASP 410
C	TYR 1	SER 52

There are 42 helices in PDB entry 5MDM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	27	31	Right-handed 310
Helix 2	AA2	E	51	54	Right-handed 310
Helix 3	AA3	E	88	101	Right-handed alpha
Helix 4	AA4	E	198	200	Right-handed 310
Helix 5	AA5	E	215	217	Right-handed 310
Helix 6	AA6	E	250	253	Right-handed 310
Helix 7	AA7	E	265	268	Right-handed 310
Helix 8	AA8	E	269	296	Right-handed alpha
Helix 9	AA9	E	301	307	Right-handed alpha
Helix 10	AB1	E	374	376	Right-handed 310
Helix 11	AB2	E	387	391	Right-handed 310
Helix 12	AB3	E	400	405	Right-handed alpha
Helix 13	AB4	F	88	101	Right-handed alpha
Helix 14	AB5	F	148	150	Right-handed 310
Helix 15	AB6	F	198	200	Right-handed 310
Helix 16	AB7	F	215	217	Right-handed 310
Helix 17	AB8	F	249	253	Right-handed 310
Helix 18	AB9	F	277	296	Right-handed alpha
Helix 19	AC1	F	301	307	Right-handed alpha
Helix 20	AC2	F	374	376	Right-handed 310
Helix 21	AC3	F	387	391	Right-handed 310
Helix 22	AC4	A	27	31	Right-handed 310
Helix 23	AC5	A	51	54	Right-handed 310
Helix 24	AC6	A	88	101	Right-handed alpha
Helix 25	AC7	A	198	200	Right-handed 310
Helix 26	AC8	A	215	217	Right-handed 310
Helix 27	AC9	A	250	253	Right-handed 310
Helix 28	AD1	A	265	268	Right-handed 310
Helix 29	AD2	A	269	296	Right-handed alpha
Helix 30	AD3	A	301	307	Right-handed alpha
Helix 31	AD4	A	374	376	Right-handed 310
Helix 32	AD5	A	387	391	Right-handed 310
Helix 33	AD6	A	400	405	Right-handed alpha
Helix 34	AD7	C	88	101	Right-handed alpha
Helix 35	AD8	C	148	150	Right-handed 310
Helix 36	AD9	C	198	200	Right-handed 310
Helix 37	AE1	C	215	217	Right-handed 310
Helix 38	AE2	C	249	253	Right-handed 310
Helix 39	AE3	C	277	296	Right-handed alpha
Helix 40	AE4	C	301	307	Right-handed alpha
Helix 41	AE5	C	374	376	Right-handed 310
Helix 42	AE6	C	387	391	Right-handed 310

There are 34 sheets in PDB entry 5MDM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	15	16	first strand
Strand 2	E	325	338	anti-parallel
Strand 3	E	314	322	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	15	16	first strand
Strand 2	E	325	338	anti-parallel
Strand 3	E	2	7	anti-parallel
Strand 4	E	392	393	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	36	49	first strand
Strand 2	E	180	192	anti-parallel
Strand 3	E	202	205	anti-parallel
Strand 4	E	212	213	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	77	85	first strand
Strand 2	E	56	69	anti-parallel
Strand 3	E	120	131	anti-parallel
Strand 4	C	76	85	anti-parallel
Strand 5	C	56	69	anti-parallel
Strand 6	C	120	131	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	158	159	first strand
Strand 2	E	165	169	anti-parallel
Strand 3	E	56	69	anti-parallel
Strand 4	E	120	131	anti-parallel
Strand 5	C	76	85	anti-parallel
Strand 6	C	56	69	anti-parallel
Strand 7	C	165	169	anti-parallel
Strand 8	C	158	159	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	135	137	first strand
Strand 2	E	142	144	anti-parallel
Strand 3	E	152	153	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	218	222	first strand
Strand 2	E	225	229	anti-parallel
Strand 3	E	235	237	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	243	244	first strand
Strand 2	E	247	248	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	342	343	first strand
Strand 2	E	383	385	anti-parallel
Strand 3	E	378	380	anti-parallel
Strand 4	E	370	372	anti-parallel
Strand 5	E	365	367	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	347	349	first strand
Strand 2	E	357	359	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	7	first strand
Strand 2	F	325	338	anti-parallel
Strand 3	F	15	16	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	7	first strand
Strand 2	F	325	338	anti-parallel
Strand 3	F	314	322	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	36	45	first strand
Strand 2	F	183	192	anti-parallel
Strand 3	F	202	205	anti-parallel
Strand 4	F	212	213	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	53	54	first strand
Strand 2	F	134	136	anti-parallel
Strand 3	F	143	144	anti-parallel
Strand 4	F	152	153	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	120	131	first strand
Strand 2	F	56	69	anti-parallel
Strand 3	F	76	85	anti-parallel
Strand 4	A	120	131	anti-parallel
Strand 5	A	56	69	anti-parallel
Strand 6	A	77	85	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	158	159	first strand
Strand 2	F	165	169	anti-parallel
Strand 3	F	56	69	anti-parallel
Strand 4	F	76	85	anti-parallel
Strand 5	A	120	131	anti-parallel
Strand 6	A	56	69	anti-parallel
Strand 7	A	165	169	anti-parallel
Strand 8	A	158	159	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	218	219	first strand
Strand 2	F	227	229	anti-parallel
Strand 3	F	235	237	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	342	343	first strand
Strand 2	F	383	385	anti-parallel
Strand 3	F	378	380	anti-parallel
Strand 4	F	370	372	anti-parallel
Strand 5	F	365	367	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	347	349	first strand
Strand 2	F	357	359	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	16	first strand
Strand 2	A	325	338	anti-parallel
Strand 3	A	314	322	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	16	first strand
Strand 2	A	325	338	anti-parallel
Strand 3	A	2	7	anti-parallel
Strand 4	A	392	393	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	49	first strand
Strand 2	A	180	192	anti-parallel
Strand 3	A	202	205	anti-parallel
Strand 4	A	212	213	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	137	first strand
Strand 2	A	142	144	anti-parallel
Strand 3	A	152	153	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	222	first strand
Strand 2	A	225	229	anti-parallel
Strand 3	A	235	237	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	244	first strand
Strand 2	A	247	248	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	343	first strand
Strand 2	A	383	385	anti-parallel
Strand 3	A	378	380	anti-parallel
Strand 4	A	370	372	anti-parallel
Strand 5	A	365	367	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	349	first strand
Strand 2	A	357	359	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	7	first strand
Strand 2	C	325	338	anti-parallel
Strand 3	C	15	16	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	7	first strand
Strand 2	C	325	338	anti-parallel
Strand 3	C	314	322	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	45	first strand
Strand 2	C	183	192	anti-parallel
Strand 3	C	202	205	anti-parallel
Strand 4	C	212	213	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	134	136	anti-parallel
Strand 3	C	143	144	anti-parallel
Strand 4	C	152	153	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	218	219	first strand
Strand 2	C	227	229	anti-parallel
Strand 3	C	235	237	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	342	343	first strand
Strand 2	C	383	385	anti-parallel
Strand 3	C	378	380	anti-parallel
Strand 4	C	370	372	anti-parallel
Strand 5	C	365	367	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	347	349	first strand
Strand 2	C	357	359	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MDM

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MDM