Analysis of interatomic Contacts of Structural Units in PDB entry:
5ME0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ME0 entry

There are 39 chains in PDB entry 5ME0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	A 1	G 515
A	G 517	C 526
A	C 528	U 965
A	A 968	G 1206
A	C 1208	G 1401
A	C 1403	U 1406
A	A 1408	G 1497
A	A 1499	G 1515
A	G 1517	G 1517
A	C 1520	A 1534
B	VAL 4	GLN 227
C	GLY 2	ILE 207
D	ALA 2	LYS 206
E	GLU 10	ILE 164
F	MET 1	LYS 106
G	PRO 2	ALA 152
H	SER 2	ALA 130
I	ASN 4	ARG 130
J	GLN 4	LEU 102
K	ARG 13	VAL 129
L	ALA 2	LYS 88
L	LEU 90	ALA 124
M	ALA 2	PRO 115
N	ALA 2	TRP 101
O	SER 2	ARG 89
P	MET 1	ALA 82
Q	LYS 4	VAL 83
R	GLU 20	HIS 74
S	ARG 3	ARG 81
T	ALA 2	ALA 87
U	PRO 2	ALA 57
V	ALA 1	LYS 71
W	ASP 382	ILE 882
Y	LYS 3	LYS 78
Z	VAL 90	GLN 180
X	C 1	G 7
X	G 9	G 19
X	A 21	G 53
X	C 56	A 76

There are109 helices in PDB entry 5ME0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	5	13	Right-handed alpha
Helix 2	AA2	B	21	23	Right-handed 310
Helix 3	AA3	B	24	28	Right-handed 310
Helix 4	AA4	B	42	63	Right-handed alpha
Helix 5	AA5	B	76	86	Right-handed alpha
Helix 6	AA6	B	103	123	Right-handed alpha
Helix 7	AA7	B	132	149	Right-handed alpha
Helix 8	AA8	B	169	179	Right-handed alpha
Helix 9	AA9	B	192	196	Right-handed 310
Helix 10	AB1	B	206	227	Right-handed alpha
Helix 11	AB2	C	25	47	Right-handed alpha
Helix 12	AB3	C	72	78	Right-handed alpha
Helix 13	AB4	C	81	96	Right-handed alpha
Helix 14	AB5	C	108	111	Right-handed 310
Helix 15	AB6	C	112	127	Right-handed alpha
Helix 16	AB7	C	129	144	Right-handed alpha
Helix 17	AB8	C	156	160	Right-handed 310
Helix 18	AB9	D	8	16	Right-handed alpha
Helix 19	AC1	D	27	31	Right-handed 310
Helix 20	AC2	D	49	66	Right-handed alpha
Helix 21	AC3	D	68	82	Right-handed alpha
Helix 22	AC4	D	85	96	Right-handed alpha
Helix 23	AC5	D	97	105	Right-handed alpha
Helix 24	AC6	D	110	120	Right-handed alpha
Helix 25	AC7	D	147	150	Right-handed 310
Helix 26	AC8	D	152	165	Right-handed alpha
Helix 27	AC9	D	187	191	Right-handed 310
Helix 28	AD1	D	196	204	Right-handed alpha
Helix 29	AD2	E	55	69	Right-handed alpha
Helix 30	AD3	E	108	119	Right-handed alpha
Helix 31	AD4	E	132	147	Right-handed alpha
Helix 32	AD5	E	149	158	Right-handed alpha
Helix 33	AD6	F	12	16	Right-handed 310
Helix 34	AD7	F	17	32	Right-handed alpha
Helix 35	AD8	F	67	81	Right-handed alpha
Helix 36	AD9	F	100	106	Right-handed alpha
Helix 37	AE1	G	20	31	Right-handed alpha
Helix 38	AE2	G	35	53	Right-handed alpha
Helix 39	AE3	G	57	70	Right-handed alpha
Helix 40	AE4	G	92	110	Right-handed alpha
Helix 41	AE5	G	115	129	Right-handed alpha
Helix 42	AE6	G	132	148	Right-handed alpha
Helix 43	AE7	G	149	152	Right-handed 310
Helix 44	AE8	H	5	20	Right-handed alpha
Helix 45	AE9	H	30	43	Right-handed alpha
Helix 46	AF1	H	88	92	Right-handed 310
Helix 47	AF2	H	94	99	Right-handed 310
Helix 48	AF3	H	113	119	Right-handed alpha
Helix 49	AF4	I	35	39	Right-handed alpha
Helix 50	AF5	I	41	50	Right-handed alpha
Helix 51	AF6	I	71	91	Right-handed alpha
Helix 52	AF7	I	94	102	Right-handed alpha
Helix 53	AF8	J	14	32	Right-handed alpha
Helix 54	AF9	J	80	88	Right-handed alpha
Helix 55	AG1	K	53	58	Right-handed alpha
Helix 56	AG2	K	59	71	Right-handed alpha
Helix 57	AG3	K	94	103	Right-handed alpha
Helix 58	AG4	L	3	10	Right-handed alpha
Helix 59	AG5	L	21	25	Right-handed 310
Helix 60	AG6	L	113	117	Right-handed 310
Helix 61	AG7	M	14	19	Right-handed alpha
Helix 62	AG8	M	20	22	Right-handed 310
Helix 63	AG9	M	26	38	Right-handed alpha
Helix 64	AH1	M	49	61	Right-handed alpha
Helix 65	AH2	M	66	84	Right-handed alpha
Helix 66	AH3	M	85	93	Right-handed alpha
Helix 67	AH4	M	106	111	Right-handed alpha
Helix 68	AH5	N	3	20	Right-handed alpha
Helix 69	AH6	N	23	34	Right-handed alpha
Helix 70	AH7	N	43	51	Right-handed alpha
Helix 71	AH8	N	52	60	Right-handed 310
Helix 72	AH9	N	80	90	Right-handed alpha
Helix 73	AI1	O	4	16	Right-handed alpha
Helix 74	AI2	O	24	46	Right-handed alpha
Helix 75	AI3	O	49	74	Right-handed alpha
Helix 76	AI4	O	74	85	Right-handed alpha
Helix 77	AI5	P	53	63	Right-handed alpha
Helix 78	AI6	P	68	82	Right-handed alpha
Helix 79	AI7	Q	49	52	Right-handed 310
Helix 80	AI8	R	25	31	Right-handed alpha
Helix 81	AI9	R	41	46	Right-handed alpha
Helix 82	AJ1	R	48	65	Right-handed alpha
Helix 83	AJ2	S	12	25	Right-handed alpha
Helix 84	AJ3	S	41	45	Right-handed 310
Helix 85	AJ4	S	63	67	Right-handed 310
Helix 86	AJ5	S	70	75	Right-handed 310
Helix 87	AJ6	T	4	40	Right-handed alpha
Helix 88	AJ7	T	43	64	Right-handed alpha
Helix 89	AJ8	T	68	85	Right-handed alpha
Helix 90	AJ9	U	11	27	Right-handed alpha
Helix 91	AK1	U	27	36	Right-handed alpha
Helix 92	AK2	U	40	55	Right-handed alpha
Helix 93	AK3	V	37	43	Right-handed alpha
Helix 94	AK4	W	403	413	Right-handed alpha
Helix 95	AK5	W	451	462	Right-handed alpha
Helix 96	AK6	W	476	489	Right-handed alpha
Helix 97	AK7	W	506	514	Right-handed alpha
Helix 98	AK8	W	541	555	Right-handed alpha
Helix 99	AK9	W	647	675	Right-handed alpha
Helix 100	AL1	W	697	709	Right-handed alpha
Helix 101	AL2	W	729	739	Right-handed alpha
Helix 102	AL3	W	751	761	Right-handed alpha
Helix 103	AL4	W	770	786	Right-handed alpha
Helix 104	AL5	Y	7	11	Right-handed 310
Helix 105	AL6	Y	31	41	Right-handed alpha
Helix 106	AL7	Y	61	76	Right-handed alpha
Helix 107	AL8	Z	103	108	Right-handed alpha
Helix 108	AL9	Z	108	120	Right-handed alpha
Helix 109	AM1	Z	139	153	Right-handed alpha

There are 28 sheets in PDB entry 5ME0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	19	first strand
Strand 2	B	38	41	anti-parallel
Strand 3	B	31	35	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	67	70	parallel
Strand 3	B	160	164	parallel
Strand 4	B	183	186	parallel
Strand 5	B	198	200	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	58	first strand
Strand 2	C	64	70	anti-parallel
Strand 3	C	99	105	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	171	first strand
Strand 2	C	148	154	anti-parallel
Strand 3	C	194	203	anti-parallel
Strand 4	C	182	191	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	129	first strand
Strand 2	D	123	125	anti-parallel
Strand 3	D	141	145	anti-parallel
Strand 4	D	179	182	anti-parallel
Strand 5	D	171	174	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	12	25	first strand
Strand 2	E	28	40	anti-parallel
Strand 3	E	45	53	anti-parallel
Strand 4	E	71	73	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	89	first strand
Strand 2	E	92	98	anti-parallel
Strand 3	E	123	129	anti-parallel
Strand 4	E	105	106	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	45	first strand
Strand 2	F	57	65	anti-parallel
Strand 3	F	3	10	anti-parallel
Strand 4	F	84	92	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	73	79	first strand
Strand 2	G	84	90	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	24	28	first strand
Strand 2	H	58	62	anti-parallel
Strand 3	H	48	52	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	74	77	first strand
Strand 2	H	123	130	anti-parallel
Strand 3	H	86	87	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	74	77	first strand
Strand 2	H	123	130	anti-parallel
Strand 3	H	101	106	anti-parallel
Strand 4	H	109	112	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	6	12	first strand
Strand 2	I	15	23	anti-parallel
Strand 3	I	61	68	anti-parallel
Strand 4	I	28	30	parallel
Strand 5	I	33	34	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	36	52	first strand
Strand 2	J	62	76	anti-parallel
Strand 3	J	6	12	anti-parallel
Strand 4	J	97	101	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	36	52	first strand
Strand 2	J	62	76	anti-parallel
Strand 3	N	96	98	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	41	46	first strand
Strand 2	K	30	36	anti-parallel
Strand 3	K	18	25	anti-parallel
Strand 4	K	81	87	parallel
Strand 5	K	106	112	parallel
Strand 6	U	3	5	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	29	40	first strand
Strand 2	L	50	57	anti-parallel
Strand 3	L	62	66	anti-parallel
Strand 4	L	95	97	parallel
Strand 5	L	79	84	anti-parallel
Strand 6	L	29	40	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	50	52	first strand
Strand 2	P	34	39	anti-parallel
Strand 3	P	14	23	anti-parallel
Strand 4	P	2	11	anti-parallel
Strand 5	P	66	67	parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	8	14	first strand
Strand 2	Q	20	30	anti-parallel
Strand 3	Q	37	47	anti-parallel
Strand 4	Q	71	80	parallel
Strand 5	Q	58	63	anti-parallel
Strand 6	Q	8	14	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	31	33	first strand
Strand 2	S	48	52	parallel
Strand 3	S	57	61	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	25	26	first strand
Strand 2	V	10	12	anti-parallel
Strand 3	V	52	56	anti-parallel
Strand 4	V	66	67	anti-parallel
Strand 5	V	35	36	parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	429	433	first strand
Strand 2	W	440	444	anti-parallel
Strand 3	W	393	397	parallel
Strand 4	W	464	469	parallel
Strand 5	W	493	497	parallel
Strand 6	W	530	532	parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	602	605	first strand
Strand 2	W	596	599	anti-parallel
Strand 3	W	640	644	anti-parallel
Strand 4	W	566	574	anti-parallel
Strand 5	W	580	588	anti-parallel
Strand 6	W	626	629	anti-parallel
Strand 7	W	609	610	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	717	724	first strand
Strand 2	W	688	694	parallel
Strand 3	W	741	745	parallel
Strand 4	W	765	767	parallel

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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	835	841	first strand
Strand 2	W	827	832	anti-parallel
Strand 3	W	876	880	anti-parallel
Strand 4	W	794	804	anti-parallel
Strand 5	W	812	820	anti-parallel
Strand 6	W	860	864	anti-parallel
Strand 7	W	844	845	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	822	823	first strand
Strand 2	W	854	855	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	25	30	first strand
Strand 2	Y	15	19	anti-parallel
Strand 3	Y	56	60	parallel
Strand 4	Y	44	49	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	92	98	first strand
Strand 2	Z	122	128	parallel
Strand 3	Z	171	176	anti-parallel
Strand 4	Z	156	158	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ME0

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ME0