Analysis of interatomic Contacts of Structural Units in PDB entry:
5ME3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ME3 entry

There are 6 chains in PDB entry 5ME3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 423ARG 1476
B
 ASN 430THR 1473
X
 UNK 1UNK 17
Y
 UNK 1UNK 17
Z
 UNK 1UNK 11
W
 UNK 1UNK 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are124 helices in PDB entry 5ME3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
435 445Right-handed alpha
Helix 2
AA2
A
449 456Right-handed alpha
Helix 3
AA3
A
460 494Right-handed alpha
Helix 4
AA4
A
500 515Right-handed alpha
Helix 5
AA5
A
522 536Right-handed alpha
Helix 6
AA6
A
545 569Right-handed alpha
Helix 7
AA7
A
578 584Right-handed alpha
Helix 8
AA8
A
585 603Right-handed alpha
Helix 9
AA9
A
608 628Right-handed alpha
Helix 10
AB1
A
638 650Right-handed alpha
Helix 11
AB2
A
666 675Right-handed alpha
Helix 12
AB3
A
677 682Right-handed alpha
Helix 13
AB4
A
682 693Right-handed alpha
Helix 14
AB5
A
694 696Right-handed 310
Helix 15
AB6
A
698 716Right-handed alpha
Helix 16
AB7
A
717 721Right-handed 310
Helix 17
AB8
A
722 735Right-handed alpha
Helix 18
AB9
A
737 750Right-handed alpha
Helix 19
AC1
A
754 756Right-handed 310
Helix 20
AC2
A
757 762Right-handed alpha
Helix 21
AC3
A
763 765Right-handed 310
Helix 22
AC4
A
769 787Right-handed alpha
Helix 23
AC5
A
789 803Right-handed alpha
Helix 24
AC6
A
808 824Right-handed alpha
Helix 25
AC7
A
825 829Right-handed 310
Helix 26
AC8
A
833 853Right-handed alpha
Helix 27
AC9
A
855 869Right-handed alpha
Helix 28
AD1
A
872 876Right-handed 310
Helix 29
AD2
A
877 903Right-handed alpha
Helix 30
AD3
A
914 927Right-handed alpha
Helix 31
AD4
A
934 942Right-handed alpha
Helix 32
AD5
A
942 947Right-handed alpha
Helix 33
AD6
A
952 966Right-handed alpha
Helix 34
AD7
A
972 987Right-handed alpha
Helix 35
AD8
A
991 1010Right-handed alpha
Helix 36
AD9
A
1012 1025Right-handed alpha
Helix 37
AE1
A
1026 1035Right-handed alpha
Helix 38
AE2
A
1044 1060Right-handed alpha
Helix 39
AE3
A
1077 1089Right-handed alpha
Helix 40
AE4
A
1095 1113Right-handed alpha
Helix 41
AE5
A
1114 1118Right-handed 310
Helix 42
AE6
A
1119 1133Right-handed alpha
Helix 43
AE7
A
1134 1157Right-handed alpha
Helix 44
AE8
A
1186 1206Right-handed alpha
Helix 45
AE9
A
1209 1227Right-handed alpha
Helix 46
AF1
A
1230 1233Right-handed 310
Helix 47
AF2
A
1234 1242Right-handed alpha
Helix 48
AF3
A
1246 1264Right-handed alpha
Helix 49
AF4
A
1264 1271Right-handed alpha
Helix 50
AF5
A
1271 1287Right-handed alpha
Helix 51
AF6
A
1290 1294Right-handed 310
Helix 52
AF7
A
1296 1306Right-handed alpha
Helix 53
AF8
A
1308 1327Right-handed alpha
Helix 54
AF9
A
1333 1351Right-handed alpha
Helix 55
AG1
A
1356 1379Right-handed alpha
Helix 56
AG2
A
1380 1384Right-handed 310
Helix 57
AG3
A
1390 1415Right-handed alpha
Helix 58
AG4
A
1418 1424Right-handed alpha
Helix 59
AG5
A
1432 1437Right-handed alpha
Helix 60
AG6
A
1450 1455Right-handed alpha
Helix 61
AG7
A
1463 1473Right-handed alpha
Helix 62
AG8
B
434 445Right-handed alpha
Helix 63
AG9
B
449 456Right-handed alpha
Helix 64
AH1
B
460 494Right-handed alpha
Helix 65
AH2
B
500 515Right-handed alpha
Helix 66
AH3
B
522 536Right-handed alpha
Helix 67
AH4
B
545 570Right-handed alpha
Helix 68
AH5
B
578 584Right-handed alpha
Helix 69
AH6
B
585 606Right-handed alpha
Helix 70
AH7
B
609 628Right-handed alpha
Helix 71
AH8
B
629 631Right-handed 310
Helix 72
AH9
B
638 650Right-handed alpha
Helix 73
AI1
B
666 675Right-handed alpha
Helix 74
AI2
B
677 682Right-handed alpha
Helix 75
AI3
B
682 693Right-handed alpha
Helix 76
AI4
B
694 696Right-handed 310
Helix 77
AI5
B
698 716Right-handed alpha
Helix 78
AI6
B
717 721Right-handed 310
Helix 79
AI7
B
722 735Right-handed alpha
Helix 80
AI8
B
737 750Right-handed alpha
Helix 81
AI9
B
754 756Right-handed 310
Helix 82
AJ1
B
757 762Right-handed alpha
Helix 83
AJ2
B
763 765Right-handed 310
Helix 84
AJ3
B
769 787Right-handed alpha
Helix 85
AJ4
B
789 803Right-handed alpha
Helix 86
AJ5
B
808 824Right-handed alpha
Helix 87
AJ6
B
825 829Right-handed 310
Helix 88
AJ7
B
833 853Right-handed alpha
Helix 89
AJ8
B
855 869Right-handed alpha
Helix 90
AJ9
B
877 903Right-handed alpha
Helix 91
AK1
B
914 927Right-handed alpha
Helix 92
AK2
B
934 942Right-handed alpha
Helix 93
AK3
B
943 945Right-handed 310
Helix 94
AK4
B
952 966Right-handed alpha
Helix 95
AK5
B
972 987Right-handed alpha
Helix 96
AK6
B
991 1010Right-handed alpha
Helix 97
AK7
B
1012 1035Right-handed alpha
Helix 98
AK8
B
1044 1060Right-handed alpha
Helix 99
AK9
B
1078 1089Right-handed alpha
Helix 100
AL1
B
1095 1113Right-handed alpha
Helix 101
AL2
B
1114 1118Right-handed 310
Helix 102
AL3
B
1119 1133Right-handed alpha
Helix 103
AL4
B
1134 1155Right-handed alpha
Helix 104
AL5
B
1186 1206Right-handed alpha
Helix 105
AL6
B
1209 1227Right-handed alpha
Helix 106
AL7
B
1230 1233Right-handed 310
Helix 107
AL8
B
1234 1242Right-handed alpha
Helix 108
AL9
B
1246 1264Right-handed alpha
Helix 109
AM1
B
1264 1271Right-handed alpha
Helix 110
AM2
B
1271 1287Right-handed alpha
Helix 111
AM3
B
1290 1294Right-handed 310
Helix 112
AM4
B
1296 1306Right-handed alpha
Helix 113
AM5
B
1308 1327Right-handed alpha
Helix 114
AM6
B
1333 1350Right-handed alpha
Helix 115
AM7
B
1356 1379Right-handed alpha
Helix 116
AM8
B
1385 1389Right-handed 310
Helix 117
AM9
B
1390 1416Right-handed alpha
Helix 118
AN1
B
1420 1426Right-handed alpha
Helix 119
AN2
B
1450 1455Right-handed alpha
Helix 120
AN3
B
1463 1473Right-handed alpha
Helix 121
AN4
X
2 17Right-handed alpha
Helix 122
AN5
Y
2 17Right-handed alpha
Helix 123
AN6
Z
2 11Right-handed alpha
Helix 124
AN7
W
2 10Right-handed alpha
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There are 3 sheets in PDB entry 5ME3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 427first strand
Strand 2
A
431 434anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1354 1355first strand
Strand 2
A
1439 1440anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1354 1355first strand
Strand 2
B
1439 1440anti-parallel
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