Analysis of interatomic Contacts of Structural Units in PDB entry:
5ME7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ME7 entry

There are 4 chains in PDB entry 5ME7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 51	VAL 235
B	ALA 53	VAL 235
C	ASN 51	VAL 235
D	ASN 51	VAL 235

There are 25 helices in PDB entry 5ME7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	51	56	Right-handed alpha
Helix 2	AA2	A	95	103	Right-handed alpha
Helix 3	AA3	A	107	111	Right-handed 310
Helix 4	AA4	A	148	161	Right-handed alpha
Helix 5	AA5	A	166	168	Right-handed 310
Helix 6	AA6	A	193	208	Right-handed alpha
Helix 7	AA7	A	219	225	Right-handed alpha
Helix 8	AA8	B	95	103	Right-handed alpha
Helix 9	AA9	B	107	111	Right-handed 310
Helix 10	AB1	B	148	161	Right-handed alpha
Helix 11	AB2	B	166	168	Right-handed 310
Helix 12	AB3	B	193	209	Right-handed alpha
Helix 13	AB4	B	219	225	Right-handed alpha
Helix 14	AB5	C	95	103	Right-handed alpha
Helix 15	AB6	C	107	111	Right-handed 310
Helix 16	AB7	C	148	161	Right-handed alpha
Helix 17	AB8	C	166	168	Right-handed 310
Helix 18	AB9	C	193	209	Right-handed alpha
Helix 19	AC1	C	219	224	Right-handed alpha
Helix 20	AC2	D	95	103	Right-handed alpha
Helix 21	AC3	D	107	111	Right-handed 310
Helix 22	AC4	D	148	161	Right-handed alpha
Helix 23	AC5	D	166	168	Right-handed 310
Helix 24	AC6	D	193	209	Right-handed alpha
Helix 25	AC7	D	219	225	Right-handed alpha

There are 4 sheets in PDB entry 5ME7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	94	first strand
Strand 2	A	61	71	anti-parallel
Strand 3	A	116	121	anti-parallel
Strand 4	A	170	176	anti-parallel
Strand 5	A	181	188	anti-parallel
Strand 6	A	137	144	anti-parallel
Strand 7	A	214	218	anti-parallel
Strand 8	A	233	235	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	94	first strand
Strand 2	B	61	71	anti-parallel
Strand 3	B	116	121	anti-parallel
Strand 4	B	170	176	anti-parallel
Strand 5	B	181	188	anti-parallel
Strand 6	B	137	144	anti-parallel
Strand 7	B	214	218	anti-parallel
Strand 8	B	233	235	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	94	first strand
Strand 2	C	61	71	anti-parallel
Strand 3	C	116	121	anti-parallel
Strand 4	C	170	176	anti-parallel
Strand 5	C	181	188	anti-parallel
Strand 6	C	137	144	anti-parallel
Strand 7	C	214	218	anti-parallel
Strand 8	C	233	235	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	94	first strand
Strand 2	D	61	71	anti-parallel
Strand 3	D	116	121	anti-parallel
Strand 4	D	170	176	anti-parallel
Strand 5	D	181	188	anti-parallel
Strand 6	D	137	144	anti-parallel
Strand 7	D	215	218	anti-parallel
Strand 8	D	233	234	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ME7

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ME7