Analysis of interatomic Contacts of Structural Units in PDB entry:
5ME9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ME9 entry

There are 3 chains in PDB entry 5ME9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 12LYS 432
B
 VAL 12ILE 430
C
 ARG 14ASN 431
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 5ME9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 38Right-handed alpha
Helix 2
AA2
A
50 61Right-handed alpha
Helix 3
AA3
A
108 134Right-handed alpha
Helix 4
AA4
A
233 239Right-handed alpha
Helix 5
AA5
A
253 256Right-handed 310
Helix 6
AA6
A
278 290Right-handed alpha
Helix 7
AA7
A
290 298Right-handed alpha
Helix 8
AA8
A
298 329Right-handed alpha
Helix 9
AA9
A
339 352Right-handed alpha
Helix 10
AB1
A
356 367Right-handed alpha
Helix 11
AB2
A
390 396Right-handed alpha
Helix 12
AB3
A
398 417Right-handed alpha
Helix 13
AB4
B
25 38Right-handed alpha
Helix 14
AB5
B
50 64Right-handed alpha
Helix 15
AB6
B
84 86Right-handed 310
Helix 16
AB7
B
108 134Right-handed alpha
Helix 17
AB8
B
233 240Right-handed alpha
Helix 18
AB9
B
253 256Right-handed 310
Helix 19
AC1
B
277 290Right-handed alpha
Helix 20
AC2
B
290 298Right-handed alpha
Helix 21
AC3
B
298 328Right-handed alpha
Helix 22
AC4
B
339 352Right-handed alpha
Helix 23
AC5
B
356 367Right-handed alpha
Helix 24
AC6
B
398 417Right-handed alpha
Helix 25
AC7
C
25 38Right-handed alpha
Helix 26
AC8
C
50 61Right-handed alpha
Helix 27
AC9
C
108 134Right-handed alpha
Helix 28
AD1
C
137 141Right-handed 310
Helix 29
AD2
C
233 241Right-handed alpha
Helix 30
AD3
C
253 256Right-handed 310
Helix 31
AD4
C
277 290Right-handed alpha
Helix 32
AD5
C
290 298Right-handed alpha
Helix 33
AD6
C
298 329Right-handed alpha
Helix 34
AD7
C
339 352Right-handed alpha
Helix 35
AD8
C
356 367Right-handed alpha
Helix 36
AD9
C
390 396Right-handed alpha
Helix 37
AE1
C
398 417Right-handed alpha
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There are 9 sheets in PDB entry 5ME9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 19first strand
Strand 2
A
42 46parallel
Strand 3
A
228 232anti-parallel
Strand 4
A
196 199anti-parallel
Strand 5
A
258 263anti-parallel
Strand 6
A
149 157anti-parallel
Strand 7
A
87 95anti-parallel
Strand 8
A
79 82anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 190first strand
Strand 2
A
249 251anti-parallel
Strand 3
A
202 207anti-parallel
Strand 4
A
220 224anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
372 375first strand
Strand 2
A
381 384anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 19first strand
Strand 2
B
42 46parallel
Strand 3
B
228 232anti-parallel
Strand 4
B
196 199anti-parallel
Strand 5
B
258 263anti-parallel
Strand 6
B
149 156anti-parallel
Strand 7
B
87 95anti-parallel
Strand 8
B
79 83anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 190first strand
Strand 2
B
249 251anti-parallel
Strand 3
B
202 207anti-parallel
Strand 4
B
220 224anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
372 375first strand
Strand 2
B
381 384anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
17 19first strand
Strand 2
C
42 46parallel
Strand 3
C
228 232anti-parallel
Strand 4
C
196 199anti-parallel
Strand 5
C
258 263anti-parallel
Strand 6
C
149 157anti-parallel
Strand 7
C
87 95anti-parallel
Strand 8
C
79 83anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
188 190first strand
Strand 2
C
249 251anti-parallel
Strand 3
C
202 207anti-parallel
Strand 4
C
220 224anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
372 375first strand
Strand 2
C
381 384anti-parallel
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