Analysis of interatomic Contacts of Structural Units in PDB entry:
5MEA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MEA entry

There is 1 chain in PDB entry 5MEA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 14ILE 430
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 5MEA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 38Right-handed alpha
Helix 2
AA2
A
50 61Right-handed alpha
Helix 3
AA3
A
108 134Right-handed alpha
Helix 4
AA4
A
136 140Right-handed 310
Helix 5
AA5
A
233 241Right-handed alpha
Helix 6
AA6
A
277 290Right-handed alpha
Helix 7
AA7
A
290 298Right-handed alpha
Helix 8
AA8
A
298 331Right-handed alpha
Helix 9
AA9
A
339 352Right-handed alpha
Helix 10
AB1
A
356 367Right-handed alpha
Helix 11
AB2
A
390 396Right-handed alpha
Helix 12
AB3
A
398 417Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 5MEA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 19first strand
Strand 2
A
42 46parallel
Strand 3
A
227 232anti-parallel
Strand 4
A
196 199anti-parallel
Strand 5
A
258 263anti-parallel
Strand 6
A
149 157anti-parallel
Strand 7
A
87 95anti-parallel
Strand 8
A
79 82anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 190first strand
Strand 2
A
249 251anti-parallel
Strand 3
A
202 207anti-parallel
Strand 4
A
220 224anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
372 375first strand
Strand 2
A
381 384anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il