Analysis of interatomic Contacts of Structural Units in PDB entry:
5MED


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MED entry

There are 2 chains in PDB entry 5MED (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 569
B
 MET 1ILE 569
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 5MED. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 10Right-handed 310
Helix 2
AA2
A
11 29Right-handed alpha
Helix 3
AA3
A
44 48Right-handed 310
Helix 4
AA4
A
50 71Right-handed alpha
Helix 5
AA5
A
82 89Right-handed 310
Helix 6
AA6
A
104 115Right-handed alpha
Helix 7
AA7
A
135 144Right-handed alpha
Helix 8
AA8
A
148 155Right-handed alpha
Helix 9
AA9
A
164 167Right-handed 310
Helix 10
AB1
A
230 232Right-handed 310
Helix 11
AB2
A
233 255Right-handed alpha
Helix 12
AB3
A
261 276Right-handed alpha
Helix 13
AB4
A
280 287Right-handed alpha
Helix 14
AB5
A
288 291Right-handed 310
Helix 15
AB6
A
292 304Right-handed alpha
Helix 16
AB7
A
309 315Right-handed alpha
Helix 17
AB8
A
318 336Right-handed alpha
Helix 18
AB9
A
337 340Right-handed 310
Helix 19
AC1
A
341 349Right-handed alpha
Helix 20
AC2
A
367 389Right-handed alpha
Helix 21
AC3
A
394 400Right-handed alpha
Helix 22
AC4
A
401 413Right-handed alpha
Helix 23
AC5
A
430 446Right-handed alpha
Helix 24
AC6
A
446 454Right-handed alpha
Helix 25
AC7
A
455 461Right-handed alpha
Helix 26
AC8
A
462 466Right-handed 310
Helix 27
AC9
A
482 490Right-handed alpha
Helix 28
AD1
A
492 508Right-handed alpha
Helix 29
AD2
A
523 551Right-handed alpha
Helix 30
AD3
A
559 563Right-handed 310
Helix 31
AD4
B
6 10Right-handed 310
Helix 32
AD5
B
11 29Right-handed alpha
Helix 33
AD6
B
44 48Right-handed 310
Helix 34
AD7
B
50 71Right-handed alpha
Helix 35
AD8
B
82 89Right-handed 310
Helix 36
AD9
B
104 115Right-handed alpha
Helix 37
AE1
B
135 144Right-handed alpha
Helix 38
AE2
B
148 155Right-handed alpha
Helix 39
AE3
B
164 167Right-handed 310
Helix 40
AE4
B
230 232Right-handed 310
Helix 41
AE5
B
233 255Right-handed alpha
Helix 42
AE6
B
261 276Right-handed alpha
Helix 43
AE7
B
280 287Right-handed alpha
Helix 44
AE8
B
288 291Right-handed 310
Helix 45
AE9
B
292 304Right-handed alpha
Helix 46
AF1
B
309 315Right-handed alpha
Helix 47
AF2
B
318 336Right-handed alpha
Helix 48
AF3
B
337 340Right-handed 310
Helix 49
AF4
B
341 349Right-handed alpha
Helix 50
AF5
B
367 389Right-handed alpha
Helix 51
AF6
B
394 400Right-handed alpha
Helix 52
AF7
B
401 413Right-handed alpha
Helix 53
AF8
B
430 446Right-handed alpha
Helix 54
AF9
B
446 454Right-handed alpha
Helix 55
AG1
B
455 461Right-handed alpha
Helix 56
AG2
B
462 466Right-handed 310
Helix 57
AG3
B
482 490Right-handed alpha
Helix 58
AG4
B
492 508Right-handed alpha
Helix 59
AG5
B
523 551Right-handed alpha
Helix 60
AG6
B
559 563Right-handed 310
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There are 6 sheets in PDB entry 5MED. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 34first strand
Strand 2
A
37 40anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 123first strand
Strand 2
A
158 162anti-parallel
Strand 3
A
193 199anti-parallel
Strand 4
A
209 216anti-parallel
Strand 5
A
228 229anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 177first strand
Strand 2
A
182 186anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 34first strand
Strand 2
B
37 40anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 123first strand
Strand 2
B
158 162anti-parallel
Strand 3
B
193 199anti-parallel
Strand 4
B
209 216anti-parallel
Strand 5
B
228 229anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 177first strand
Strand 2
B
182 186anti-parallel
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