Analysis of interatomic Contacts of Structural Units in PDB entry:
5MEX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MEX entry

There is 1 chain in PDB entry 5MEX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 26GLU 347
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5MEX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 43Right-handed alpha
Helix 2
AA2
A
65 79Right-handed alpha
Helix 3
AA3
A
95 109Right-handed alpha
Helix 4
AA4
A
117 121Right-handed 310
Helix 5
AA5
A
123 127Right-handed 310
Helix 6
AA6
A
133 138Right-handed alpha
Helix 7
AA7
A
141 146Right-handed alpha
Helix 8
AA8
A
157 161Right-handed 310
Helix 9
AA9
A
162 169Right-handed alpha
Helix 10
AB1
A
178 191Right-handed alpha
Helix 11
AB2
A
202 212Right-handed alpha
Helix 12
AB3
A
219 234Right-handed alpha
Helix 13
AB4
A
243 249Right-handed alpha
Helix 14
AB5
A
249 261Right-handed alpha
Helix 15
AB6
A
266 272Right-handed alpha
Helix 16
AB7
A
273 282Right-handed alpha
Helix 17
AB8
A
283 289Right-handed alpha
Helix 18
AB9
A
290 294Right-handed 310
Helix 19
AC1
A
307 312Right-handed 310
Helix 20
AC2
A
318 323Right-handed 310
Helix 21
AC3
A
325 341Right-handed alpha
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There are 2 sheets in PDB entry 5MEX. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 51first strand
Strand 2
A
54 59anti-parallel
Strand 3
A
62 64anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 154first strand
Strand 2
A
86 90parallel
Strand 3
A
171 176parallel
Strand 4
A
238 242parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il