Analysis of interatomic Contacts of Structural Units in PDB entry:
5MF1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MF1 entry

There are 3 chains in PDB entry 5MF1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 24	GLN 581
B	VAL 24	GLN 581
C	VAL 24	GLN 581

There are 21 helices in PDB entry 5MF1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	184	190	Right-handed alpha
Helix 2	AA2	A	355	359	Right-handed 310
Helix 3	AA3	A	372	377	Right-handed alpha
Helix 4	AA4	A	388	392	Right-handed 310
Helix 5	AA5	A	394	408	Right-handed alpha
Helix 6	AA6	A	415	419	Right-handed 310
Helix 7	AA7	A	424	429	Right-handed alpha
Helix 8	AA8	A	476	480	Right-handed 310
Helix 9	AA9	B	185	190	Right-handed alpha
Helix 10	AB1	B	355	359	Right-handed 310
Helix 11	AB2	B	372	377	Right-handed alpha
Helix 12	AB3	B	394	408	Right-handed alpha
Helix 13	AB4	B	415	419	Right-handed 310
Helix 14	AB5	B	424	429	Right-handed alpha
Helix 15	AB6	B	476	480	Right-handed 310
Helix 16	AB7	C	355	359	Right-handed 310
Helix 17	AB8	C	372	377	Right-handed alpha
Helix 18	AB9	C	394	408	Right-handed alpha
Helix 19	AC1	C	415	419	Right-handed 310
Helix 20	AC2	C	424	429	Right-handed alpha
Helix 21	AC3	C	476	480	Right-handed 310

There are 21 sheets in PDB entry 5MF1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	299	first strand
Strand 2	A	302	309	anti-parallel
Strand 3	A	447	453	anti-parallel
Strand 4	A	42	54	anti-parallel
Strand 5	A	29	36	anti-parallel
Strand 6	B	458	464	parallel
Strand 7	B	63	67	anti-parallel
Strand 8	B	99	105	anti-parallel
Strand 9	B	232	237	anti-parallel
Strand 10	B	285	286	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	285	288	first strand
Strand 2	A	232	237	anti-parallel
Strand 3	A	99	105	anti-parallel
Strand 4	A	63	67	anti-parallel
Strand 5	A	458	464	anti-parallel
Strand 6	C	29	36	parallel
Strand 7	C	42	54	anti-parallel
Strand 8	C	447	453	anti-parallel
Strand 9	C	302	309	anti-parallel
Strand 10	C	296	299	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	229	first strand
Strand 2	A	109	112	anti-parallel
Strand 3	A	437	440	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	121	first strand
Strand 2	A	217	223	anti-parallel
Strand 3	A	323	327	anti-parallel
Strand 4	A	352	354	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	129	first strand
Strand 2	A	207	212	anti-parallel
Strand 3	A	163	165	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	467	475	first strand
Strand 2	A	492	500	anti-parallel
Strand 3	A	541	545	anti-parallel
Strand 4	A	519	520	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	467	475	first strand
Strand 2	A	492	500	anti-parallel
Strand 3	A	534	536	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	484	486	first strand
Strand 2	A	565	577	parallel
Strand 3	A	551	562	anti-parallel
Strand 4	A	506	513	anti-parallel
Strand 5	A	525	529	anti-parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	299	first strand
Strand 2	B	302	309	anti-parallel
Strand 3	B	447	453	anti-parallel
Strand 4	B	42	54	anti-parallel
Strand 5	B	29	36	anti-parallel
Strand 6	C	458	464	parallel
Strand 7	C	63	67	anti-parallel
Strand 8	C	99	105	anti-parallel
Strand 9	C	232	237	anti-parallel
Strand 10	C	285	288	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	229	first strand
Strand 2	B	109	112	anti-parallel
Strand 3	B	437	440	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	121	first strand
Strand 2	B	217	223	anti-parallel
Strand 3	B	323	327	anti-parallel
Strand 4	B	352	354	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	129	first strand
Strand 2	B	207	212	anti-parallel
Strand 3	B	163	165	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	467	475	first strand
Strand 2	B	492	500	anti-parallel
Strand 3	B	541	545	anti-parallel
Strand 4	B	519	520	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	467	475	first strand
Strand 2	B	492	500	anti-parallel
Strand 3	B	534	536	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	484	486	first strand
Strand 2	B	565	577	parallel
Strand 3	B	551	562	anti-parallel
Strand 4	B	506	513	anti-parallel
Strand 5	B	525	529	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	227	229	first strand
Strand 2	C	109	112	anti-parallel
Strand 3	C	437	440	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	121	first strand
Strand 2	C	217	223	anti-parallel
Strand 3	C	323	327	anti-parallel
Strand 4	C	352	354	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	129	first strand
Strand 2	C	207	212	anti-parallel
Strand 3	C	163	165	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	467	475	first strand
Strand 2	C	492	500	anti-parallel
Strand 3	C	541	545	anti-parallel
Strand 4	C	519	520	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	467	475	first strand
Strand 2	C	492	500	anti-parallel
Strand 3	C	534	536	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	484	486	first strand
Strand 2	C	565	577	parallel
Strand 3	C	551	562	anti-parallel
Strand 4	C	506	513	anti-parallel
Strand 5	C	525	529	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MF1

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MF1