Analysis of interatomic Contacts of Structural Units in PDB entry:
5MFC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MFC entry

There are 6 chains in PDB entry 5MFC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 8SER 292
B
 LYS 989LEU 1064
B
 VAL 1068HIS 1231
C
 GLY 10GLN 291
D
 ARG 990LEU 1064
D
 VAL 1068ILE 1229
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 5MFC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 20Right-handed alpha
Helix 2
AA2
A
24 40Right-handed alpha
Helix 3
AA3
A
42 52Right-handed alpha
Helix 4
AA4
A
54 61Right-handed alpha
Helix 5
AA5
A
62 64Right-handed 310
Helix 6
AA6
A
66 81Right-handed alpha
Helix 7
AA7
A
84 94Right-handed alpha
Helix 8
AA8
A
95 103Right-handed alpha
Helix 9
AA9
A
104 106Right-handed 310
Helix 10
AB1
A
108 123Right-handed alpha
Helix 11
AB2
A
126 136Right-handed alpha
Helix 12
AB3
A
138 145Right-handed alpha
Helix 13
AB4
A
146 148Right-handed 310
Helix 14
AB5
A
150 165Right-handed alpha
Helix 15
AB6
A
168 178Right-handed alpha
Helix 16
AB7
A
179 187Right-handed alpha
Helix 17
AB8
A
192 207Right-handed alpha
Helix 18
AB9
A
210 220Right-handed alpha
Helix 19
AC1
A
221 229Right-handed alpha
Helix 20
AC2
A
234 250Right-handed alpha
Helix 21
AC3
A
252 263Right-handed alpha
Helix 22
AC4
A
263 271Right-handed alpha
Helix 23
AC5
A
277 291Right-handed alpha
Helix 24
AC6
B
1003 1009Right-handed 310
Helix 25
AC7
B
1056 1061Right-handed 310
Helix 26
AC8
B
1068 1072Right-handed 310
Helix 27
AC9
B
1075 1081Right-handed 310
Helix 28
AD1
B
1082 1087Right-handed alpha
Helix 29
AD2
B
1156 1159Right-handed 310
Helix 30
AD3
C
12 20Right-handed alpha
Helix 31
AD4
C
24 39Right-handed alpha
Helix 32
AD5
C
42 52Right-handed alpha
Helix 33
AD6
C
54 61Right-handed alpha
Helix 34
AD7
C
62 64Right-handed 310
Helix 35
AD8
C
66 81Right-handed alpha
Helix 36
AD9
C
84 94Right-handed alpha
Helix 37
AE1
C
95 103Right-handed alpha
Helix 38
AE2
C
104 106Right-handed 310
Helix 39
AE3
C
108 123Right-handed alpha
Helix 40
AE4
C
126 136Right-handed alpha
Helix 41
AE5
C
138 145Right-handed alpha
Helix 42
AE6
C
146 148Right-handed 310
Helix 43
AE7
C
150 165Right-handed alpha
Helix 44
AE8
C
168 178Right-handed alpha
Helix 45
AE9
C
179 187Right-handed alpha
Helix 46
AF1
C
192 207Right-handed alpha
Helix 47
AF2
C
210 220Right-handed alpha
Helix 48
AF3
C
221 229Right-handed alpha
Helix 49
AF4
C
234 250Right-handed alpha
Helix 50
AF5
C
252 263Right-handed alpha
Helix 51
AF6
C
263 271Right-handed alpha
Helix 52
AF7
C
276 290Right-handed alpha
Helix 53
AF8
D
1003 1009Right-handed 310
Helix 54
AF9
D
1056 1061Right-handed 310
Helix 55
AG1
D
1068 1072Right-handed 310
Helix 56
AG2
D
1075 1081Right-handed 310
Helix 57
AG3
D
1082 1087Right-handed alpha
Helix 58
AG4
D
1156 1159Right-handed 310
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There are 2 sheets in PDB entry 5MFC. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1012 1022first strand
Strand 2
B
1025 1036anti-parallel
Strand 3
B
1041 1048anti-parallel
Strand 4
B
1217 1227anti-parallel
Strand 5
B
1199 1208anti-parallel
Strand 6
B
1148 1155anti-parallel
Strand 7
B
1160 1170anti-parallel
Strand 8
B
1176 1187anti-parallel
Strand 9
B
1092 1100anti-parallel
Strand 10
B
1105 1115anti-parallel
Strand 11
B
1118 1128anti-parallel
Strand 12
B
1012 1022parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1012 1022first strand
Strand 2
D
1025 1036anti-parallel
Strand 3
D
1041 1048anti-parallel
Strand 4
D
1217 1227anti-parallel
Strand 5
D
1199 1208anti-parallel
Strand 6
D
1148 1155anti-parallel
Strand 7
D
1160 1170anti-parallel
Strand 8
D
1176 1187anti-parallel
Strand 9
D
1092 1100anti-parallel
Strand 10
D
1105 1115anti-parallel
Strand 11
D
1118 1128anti-parallel
Strand 12
D
1012 1022parallel
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