Analysis of interatomic Contacts of Structural Units in PDB entry:
5MFD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MFD entry

There are 7 chains in PDB entry 5MFD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 12	SER 334
B	PRO 19	LYS 123
C	GLU 12	SER 334
D	GLY 18	ARG 124
E	GLU 12	SER 334
F	PRO 19	LYS 123
G	GLU 12	ALA 73

There are252 helices in PDB entry 5MFD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	19	Right-handed alpha
Helix 2	AA2	A	24	39	Right-handed alpha
Helix 3	AA3	A	42	52	Right-handed alpha
Helix 4	AA4	A	53	61	Right-handed alpha
Helix 5	AA5	A	62	64	Right-handed 310
Helix 6	AA6	A	66	81	Right-handed alpha
Helix 7	AA7	A	84	94	Right-handed alpha
Helix 8	AA8	A	95	103	Right-handed alpha
Helix 9	AA9	A	104	106	Right-handed 310
Helix 10	AB1	A	108	123	Right-handed alpha
Helix 11	AB2	A	126	136	Right-handed alpha
Helix 12	AB3	A	137	146	Right-handed alpha
Helix 13	AB4	A	150	165	Right-handed alpha
Helix 14	AB5	A	168	178	Right-handed alpha
Helix 15	AB6	A	180	187	Right-handed alpha
Helix 16	AB7	A	188	190	Right-handed 310
Helix 17	AB8	A	192	207	Right-handed alpha
Helix 18	AB9	A	210	220	Right-handed alpha
Helix 19	AC1	A	222	229	Right-handed alpha
Helix 20	AC2	A	230	232	Right-handed 310
Helix 21	AC3	A	234	249	Right-handed alpha
Helix 22	AC4	A	252	262	Right-handed alpha
Helix 23	AC5	A	263	271	Right-handed alpha
Helix 24	AC6	A	272	274	Right-handed 310
Helix 25	AC7	A	276	291	Right-handed alpha
Helix 26	AC8	A	294	304	Right-handed alpha
Helix 27	AC9	A	305	313	Right-handed alpha
Helix 28	AD1	A	314	316	Right-handed 310
Helix 29	AD2	A	318	334	Right-handed alpha
Helix 30	AD3	B	93	99	Right-handed alpha
Helix 31	AD4	B	100	102	Right-handed 310
Helix 32	AD5	C	13	22	Right-handed alpha
Helix 33	AD6	C	24	40	Right-handed alpha
Helix 34	AD7	C	42	53	Right-handed alpha
Helix 35	AD8	C	54	61	Right-handed alpha
Helix 36	AD9	C	62	64	Right-handed 310
Helix 37	AE1	C	66	81	Right-handed alpha
Helix 38	AE2	C	84	94	Right-handed alpha
Helix 39	AE3	C	95	103	Right-handed alpha
Helix 40	AE4	C	104	106	Right-handed 310
Helix 41	AE5	C	108	123	Right-handed alpha
Helix 42	AE6	C	126	136	Right-handed alpha
Helix 43	AE7	C	137	145	Right-handed alpha
Helix 44	AE8	C	146	148	Right-handed 310
Helix 45	AE9	C	150	165	Right-handed alpha
Helix 46	AF1	C	168	178	Right-handed alpha
Helix 47	AF2	C	179	187	Right-handed alpha
Helix 48	AF3	C	188	190	Right-handed 310
Helix 49	AF4	C	192	208	Right-handed alpha
Helix 50	AF5	C	210	220	Right-handed alpha
Helix 51	AF6	C	222	229	Right-handed alpha
Helix 52	AF7	C	230	232	Right-handed 310
Helix 53	AF8	C	234	249	Right-handed alpha
Helix 54	AF9	C	252	262	Right-handed alpha
Helix 55	AG1	C	263	271	Right-handed alpha
Helix 56	AG2	C	272	274	Right-handed 310
Helix 57	AG3	C	276	292	Right-handed alpha
Helix 58	AG4	C	294	304	Right-handed alpha
Helix 59	AG5	C	305	313	Right-handed alpha
Helix 60	AG6	C	314	316	Right-handed 310
Helix 61	AG7	C	318	334	Right-handed alpha
Helix 62	AG8	D	93	99	Right-handed alpha
Helix 63	AG9	D	100	102	Right-handed 310
Helix 64	AH1	E	13	19	Right-handed alpha
Helix 65	AH2	E	20	22	Right-handed 310
Helix 66	AH3	E	24	39	Right-handed alpha
Helix 67	AH4	E	41	52	Right-handed alpha
Helix 68	AH5	E	54	61	Right-handed alpha
Helix 69	AH6	E	62	64	Right-handed 310
Helix 70	AH7	E	66	81	Right-handed alpha
Helix 71	AH8	E	84	94	Right-handed alpha
Helix 72	AH9	E	95	103	Right-handed alpha
Helix 73	AI1	E	104	106	Right-handed 310
Helix 74	AI2	E	108	123	Right-handed alpha
Helix 75	AI3	E	126	136	Right-handed alpha
Helix 76	AI4	E	137	145	Right-handed alpha
Helix 77	AI5	E	146	148	Right-handed 310
Helix 78	AI6	E	150	165	Right-handed alpha
Helix 79	AI7	E	168	178	Right-handed alpha
Helix 80	AI8	E	179	187	Right-handed alpha
Helix 81	AI9	E	188	190	Right-handed 310
Helix 82	AJ1	E	192	207	Right-handed alpha
Helix 83	AJ2	E	210	219	Right-handed alpha
Helix 84	AJ3	E	221	229	Right-handed alpha
Helix 85	AJ4	E	230	232	Right-handed 310
Helix 86	AJ5	E	234	249	Right-handed alpha
Helix 87	AJ6	E	252	262	Right-handed alpha
Helix 88	AJ7	E	263	271	Right-handed alpha
Helix 89	AJ8	E	272	274	Right-handed 310
Helix 90	AJ9	E	276	292	Right-handed alpha
Helix 91	AK1	E	294	304	Right-handed alpha
Helix 92	AK2	E	305	313	Right-handed alpha
Helix 93	AK3	E	314	316	Right-handed 310
Helix 94	AK4	E	318	334	Right-handed alpha
Helix 95	AK5	F	83	85	Right-handed 310
Helix 96	AK6	F	93	99	Right-handed alpha
Helix 97	AK7	F	100	102	Right-handed 310
Helix 98	AK8	G	13	19	Right-handed alpha
Helix 99	AK9	G	20	22	Right-handed 310
Helix 100	AL1	G	24	39	Right-handed alpha
Helix 101	AL2	G	41	52	Right-handed alpha
Helix 102	AL3	G	54	61	Right-handed alpha
Helix 103	AL4	G	62	64	Right-handed 310
Helix 104	AL5	G	66	81	Right-handed alpha
Helix 105	AL6	G	84	94	Right-handed alpha
Helix 106	AL7	G	95	103	Right-handed alpha
Helix 107	AL8	G	104	106	Right-handed 310
Helix 108	AL9	G	108	123	Right-handed alpha
Helix 109	AM1	G	126	136	Right-handed alpha
Helix 110	AM2	G	138	145	Right-handed alpha
Helix 111	AM3	G	146	148	Right-handed 310
Helix 112	AM4	G	150	165	Right-handed alpha
Helix 113	AM5	G	168	178	Right-handed alpha
Helix 114	AM6	G	179	187	Right-handed alpha
Helix 115	AM7	G	188	190	Right-handed 310
Helix 116	AM8	G	192	207	Right-handed alpha
Helix 117	AM9	G	210	220	Right-handed alpha
Helix 118	AN1	G	221	229	Right-handed alpha
Helix 119	AN2	G	230	232	Right-handed 310
Helix 120	AN3	G	234	249	Right-handed alpha
Helix 121	AN4	G	252	262	Right-handed alpha
Helix 122	AN5	G	263	271	Right-handed alpha
Helix 123	AN6	G	272	274	Right-handed 310
Helix 124	AN7	G	276	292	Right-handed alpha
Helix 125	AN8	G	294	304	Right-handed alpha
Helix 126	AN9	G	305	313	Right-handed alpha
Helix 127	AO1	G	314	316	Right-handed 310
Helix 128	AO2	G	318	333	Right-handed alpha
Helix 129	AO3	H	93	99	Right-handed alpha
Helix 130	AO4	H	100	102	Right-handed 310
Helix 131	AO5	I	13	22	Right-handed alpha
Helix 132	AO6	I	24	39	Right-handed alpha
Helix 133	AO7	I	41	52	Right-handed alpha
Helix 134	AO8	I	54	61	Right-handed alpha
Helix 135	AO9	I	62	64	Right-handed 310
Helix 136	AP1	I	66	81	Right-handed alpha
Helix 137	AP2	I	84	94	Right-handed alpha
Helix 138	AP3	I	95	103	Right-handed alpha
Helix 139	AP4	I	104	106	Right-handed 310
Helix 140	AP5	I	108	123	Right-handed alpha
Helix 141	AP6	I	126	136	Right-handed alpha
Helix 142	AP7	I	138	145	Right-handed alpha
Helix 143	AP8	I	146	148	Right-handed 310
Helix 144	AP9	I	150	165	Right-handed alpha
Helix 145	AQ1	I	168	178	Right-handed alpha
Helix 146	AQ2	I	179	187	Right-handed alpha
Helix 147	AQ3	I	188	190	Right-handed 310
Helix 148	AQ4	I	192	207	Right-handed alpha
Helix 149	AQ5	I	210	220	Right-handed alpha
Helix 150	AQ6	I	222	229	Right-handed alpha
Helix 151	AQ7	I	230	232	Right-handed 310
Helix 152	AQ8	I	234	249	Right-handed alpha
Helix 153	AQ9	I	252	262	Right-handed alpha
Helix 154	AR1	I	263	271	Right-handed alpha
Helix 155	AR2	I	272	274	Right-handed 310
Helix 156	AR3	I	276	291	Right-handed alpha
Helix 157	AR4	I	294	304	Right-handed alpha
Helix 158	AR5	I	305	313	Right-handed alpha
Helix 159	AR6	I	314	316	Right-handed 310
Helix 160	AR7	I	318	334	Right-handed alpha
Helix 161	AR8	J	13	22	Right-handed alpha
Helix 162	AR9	J	24	39	Right-handed alpha
Helix 163	AS1	J	41	52	Right-handed alpha
Helix 164	AS2	J	54	61	Right-handed alpha
Helix 165	AS3	J	62	64	Right-handed 310
Helix 166	AS4	J	66	81	Right-handed alpha
Helix 167	AS5	J	84	94	Right-handed alpha
Helix 168	AS6	J	95	103	Right-handed alpha
Helix 169	AS7	J	104	106	Right-handed 310
Helix 170	AS8	J	108	123	Right-handed alpha
Helix 171	AS9	J	126	136	Right-handed alpha
Helix 172	AT1	J	138	145	Right-handed alpha
Helix 173	AT2	J	146	148	Right-handed 310
Helix 174	AT3	J	150	165	Right-handed alpha
Helix 175	AT4	J	168	178	Right-handed alpha
Helix 176	AT5	J	179	187	Right-handed alpha
Helix 177	AT6	J	188	190	Right-handed 310
Helix 178	AT7	J	192	207	Right-handed alpha
Helix 179	AT8	J	210	220	Right-handed alpha
Helix 180	AT9	J	221	229	Right-handed alpha
Helix 181	AU1	J	230	232	Right-handed 310
Helix 182	AU2	J	234	249	Right-handed alpha
Helix 183	AU3	J	252	262	Right-handed alpha
Helix 184	AU4	J	263	271	Right-handed alpha
Helix 185	AU5	J	272	274	Right-handed 310
Helix 186	AU6	J	276	292	Right-handed alpha
Helix 187	AU7	J	294	304	Right-handed alpha
Helix 188	AU8	J	306	313	Right-handed alpha
Helix 189	AU9	J	314	316	Right-handed 310
Helix 190	AV1	J	318	334	Right-handed alpha
Helix 191	AV2	K	13	19	Right-handed alpha
Helix 192	AV3	K	20	22	Right-handed 310
Helix 193	AV4	K	24	40	Right-handed alpha
Helix 194	AV5	K	42	52	Right-handed alpha
Helix 195	AV6	K	53	61	Right-handed alpha
Helix 196	AV7	K	62	64	Right-handed 310
Helix 197	AV8	K	66	81	Right-handed alpha
Helix 198	AV9	K	84	93	Right-handed alpha
Helix 199	AW1	K	95	103	Right-handed alpha
Helix 200	AW2	K	104	106	Right-handed 310
Helix 201	AW3	K	108	123	Right-handed alpha
Helix 202	AW4	K	126	136	Right-handed alpha
Helix 203	AW5	K	138	145	Right-handed alpha
Helix 204	AW6	K	146	148	Right-handed 310
Helix 205	AW7	K	150	166	Right-handed alpha
Helix 206	AW8	K	168	178	Right-handed alpha
Helix 207	AW9	K	179	187	Right-handed alpha
Helix 208	AX1	K	188	190	Right-handed 310
Helix 209	AX2	K	192	207	Right-handed alpha
Helix 210	AX3	K	210	220	Right-handed alpha
Helix 211	AX4	K	221	229	Right-handed alpha
Helix 212	AX5	K	230	232	Right-handed 310
Helix 213	AX6	K	234	249	Right-handed alpha
Helix 214	AX7	K	252	262	Right-handed alpha
Helix 215	AX8	K	263	271	Right-handed alpha
Helix 216	AX9	K	272	274	Right-handed 310
Helix 217	AY1	K	276	292	Right-handed alpha
Helix 218	AY2	K	294	304	Right-handed alpha
Helix 219	AY3	K	305	313	Right-handed alpha
Helix 220	AY4	K	314	316	Right-handed 310
Helix 221	AY5	K	318	333	Right-handed alpha
Helix 222	AY6	L	13	19	Right-handed alpha
Helix 223	AY7	L	20	22	Right-handed 310
Helix 224	AY8	L	24	40	Right-handed alpha
Helix 225	AY9	L	42	52	Right-handed alpha
Helix 226	AZ1	L	54	61	Right-handed alpha
Helix 227	AZ2	L	62	64	Right-handed 310
Helix 228	AZ3	L	66	81	Right-handed alpha
Helix 229	AZ4	L	84	94	Right-handed alpha
Helix 230	AZ5	L	96	103	Right-handed alpha
Helix 231	AZ6	L	104	106	Right-handed 310
Helix 232	AZ7	L	108	123	Right-handed alpha
Helix 233	AZ8	L	126	136	Right-handed alpha
Helix 234	AZ9	L	138	145	Right-handed alpha
Helix 235	BA1	L	146	148	Right-handed 310
Helix 236	BA2	L	150	165	Right-handed alpha
Helix 237	BA3	L	168	178	Right-handed alpha
Helix 238	BA4	L	179	187	Right-handed alpha
Helix 239	BA5	L	188	190	Right-handed 310
Helix 240	BA6	L	192	207	Right-handed alpha
Helix 241	BA7	L	210	220	Right-handed alpha
Helix 242	BA8	L	222	229	Right-handed alpha
Helix 243	BA9	L	230	232	Right-handed 310
Helix 244	BB1	L	234	249	Right-handed alpha
Helix 245	BB2	L	252	262	Right-handed alpha
Helix 246	BB3	L	263	271	Right-handed alpha
Helix 247	BB4	L	272	274	Right-handed 310
Helix 248	BB5	L	276	291	Right-handed alpha
Helix 249	BB6	L	294	304	Right-handed alpha
Helix 250	BB7	L	305	313	Right-handed alpha
Helix 251	BB8	L	314	316	Right-handed 310
Helix 252	BB9	L	318	334	Right-handed alpha

There are 9 sheets in PDB entry 5MFD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	24	first strand
Strand 2	B	71	75	anti-parallel
Strand 3	B	57	61	anti-parallel
Strand 4	B	36	39	anti-parallel
Strand 5	B	46	48	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	79	first strand
Strand 2	B	105	107	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	121	first strand
Strand 2	D	121	123	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	24	first strand
Strand 2	D	71	75	anti-parallel
Strand 3	D	57	61	anti-parallel
Strand 4	D	36	39	anti-parallel
Strand 5	D	46	48	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	81	first strand
Strand 2	D	105	109	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	20	24	first strand
Strand 2	F	71	75	anti-parallel
Strand 3	F	59	61	anti-parallel
Strand 4	F	36	39	anti-parallel
Strand 5	F	46	48	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	77	81	first strand
Strand 2	F	105	109	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	21	24	first strand
Strand 2	H	71	75	anti-parallel
Strand 3	H	57	61	anti-parallel
Strand 4	H	36	39	anti-parallel
Strand 5	H	46	48	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	77	81	first strand
Strand 2	H	105	109	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MFD

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MFD