Analysis of interatomic Contacts of Structural Units in PDB entry:
5MFE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MFE entry

There are 5 chains in PDB entry 5MFE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 12SER 292
B
 GLU 12HIS 293
C
 SER 11HIS 293
D
 SER 11SER 292
E
 ARG 1ARG 7
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 92 helices in PDB entry 5MFE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 19Right-handed alpha
Helix 2
AA2
A
20 22Right-handed 310
Helix 3
AA3
A
24 40Right-handed alpha
Helix 4
AA4
A
42 52Right-handed alpha
Helix 5
AA5
A
53 61Right-handed alpha
Helix 6
AA6
A
62 64Right-handed 310
Helix 7
AA7
A
66 81Right-handed alpha
Helix 8
AA8
A
84 94Right-handed alpha
Helix 9
AA9
A
95 103Right-handed alpha
Helix 10
AB1
A
104 106Right-handed 310
Helix 11
AB2
A
108 123Right-handed alpha
Helix 12
AB3
A
126 136Right-handed alpha
Helix 13
AB4
A
138 146Right-handed alpha
Helix 14
AB5
A
150 166Right-handed alpha
Helix 15
AB6
A
168 178Right-handed alpha
Helix 16
AB7
A
179 188Right-handed alpha
Helix 17
AB8
A
192 207Right-handed alpha
Helix 18
AB9
A
210 220Right-handed alpha
Helix 19
AC1
A
221 230Right-handed alpha
Helix 20
AC2
A
234 250Right-handed alpha
Helix 21
AC3
A
252 262Right-handed alpha
Helix 22
AC4
A
263 272Right-handed alpha
Helix 23
AC5
A
276 292Right-handed alpha
Helix 24
AC6
B
13 19Right-handed alpha
Helix 25
AC7
B
20 22Right-handed 310
Helix 26
AC8
B
24 40Right-handed alpha
Helix 27
AC9
B
42 52Right-handed alpha
Helix 28
AD1
B
53 61Right-handed alpha
Helix 29
AD2
B
62 64Right-handed 310
Helix 30
AD3
B
66 81Right-handed alpha
Helix 31
AD4
B
84 94Right-handed alpha
Helix 32
AD5
B
95 103Right-handed alpha
Helix 33
AD6
B
104 106Right-handed 310
Helix 34
AD7
B
108 123Right-handed alpha
Helix 35
AD8
B
126 136Right-handed alpha
Helix 36
AD9
B
137 146Right-handed alpha
Helix 37
AE1
B
150 165Right-handed alpha
Helix 38
AE2
B
168 178Right-handed alpha
Helix 39
AE3
B
179 188Right-handed alpha
Helix 40
AE4
B
192 207Right-handed alpha
Helix 41
AE5
B
210 220Right-handed alpha
Helix 42
AE6
B
221 230Right-handed alpha
Helix 43
AE7
B
234 250Right-handed alpha
Helix 44
AE8
B
252 262Right-handed alpha
Helix 45
AE9
B
263 272Right-handed alpha
Helix 46
AF1
B
276 291Right-handed alpha
Helix 47
AF2
C
12 19Right-handed alpha
Helix 48
AF3
C
20 22Right-handed 310
Helix 49
AF4
C
24 40Right-handed alpha
Helix 50
AF5
C
42 52Right-handed alpha
Helix 51
AF6
C
53 61Right-handed alpha
Helix 52
AF7
C
62 64Right-handed 310
Helix 53
AF8
C
66 81Right-handed alpha
Helix 54
AF9
C
84 94Right-handed alpha
Helix 55
AG1
C
95 103Right-handed alpha
Helix 56
AG2
C
104 106Right-handed 310
Helix 57
AG3
C
108 123Right-handed alpha
Helix 58
AG4
C
126 136Right-handed alpha
Helix 59
AG5
C
137 145Right-handed alpha
Helix 60
AG6
C
146 148Right-handed 310
Helix 61
AG7
C
150 165Right-handed alpha
Helix 62
AG8
C
168 178Right-handed alpha
Helix 63
AG9
C
179 187Right-handed alpha
Helix 64
AH1
C
188 190Right-handed 310
Helix 65
AH2
C
192 207Right-handed alpha
Helix 66
AH3
C
210 220Right-handed alpha
Helix 67
AH4
C
221 230Right-handed alpha
Helix 68
AH5
C
234 249Right-handed alpha
Helix 69
AH6
C
252 262Right-handed alpha
Helix 70
AH7
C
263 272Right-handed alpha
Helix 71
AH8
C
276 291Right-handed alpha
Helix 72
AH9
D
12 20Right-handed alpha
Helix 73
AI1
D
24 40Right-handed alpha
Helix 74
AI2
D
42 52Right-handed alpha
Helix 75
AI3
D
53 62Right-handed alpha
Helix 76
AI4
D
66 81Right-handed alpha
Helix 77
AI5
D
84 94Right-handed alpha
Helix 78
AI6
D
95 103Right-handed alpha
Helix 79
AI7
D
104 106Right-handed 310
Helix 80
AI8
D
108 123Right-handed alpha
Helix 81
AI9
D
126 136Right-handed alpha
Helix 82
AJ1
D
138 146Right-handed alpha
Helix 83
AJ2
D
150 165Right-handed alpha
Helix 84
AJ3
D
168 178Right-handed alpha
Helix 85
AJ4
D
179 188Right-handed alpha
Helix 86
AJ5
D
192 207Right-handed alpha
Helix 87
AJ6
D
210 220Right-handed alpha
Helix 88
AJ7
D
221 230Right-handed alpha
Helix 89
AJ8
D
234 250Right-handed alpha
Helix 90
AJ9
D
252 262Right-handed alpha
Helix 91
AK1
D
263 272Right-handed alpha
Helix 92
AK2
D
276 291Right-handed alpha
Back to top of page
There are no sheets in PDB entry 5MFE
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il