Analysis of interatomic Contacts of Structural Units in PDB entry:
5MFF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MFF entry

There are 6 chains in PDB entry 5MFF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 12GLN 291
B
 GLU 12GLN 291
C
 GLU 12LEU 290
D
 GLU 12LEU 290
E
 ARG 1ARG 10
F
 ARG 1ARG 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 94 helices in PDB entry 5MFF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 20Right-handed alpha
Helix 2
AA2
A
24 40Right-handed alpha
Helix 3
AA3
A
42 52Right-handed alpha
Helix 4
AA4
A
53 61Right-handed alpha
Helix 5
AA5
A
62 64Right-handed 310
Helix 6
AA6
A
66 81Right-handed alpha
Helix 7
AA7
A
84 94Right-handed alpha
Helix 8
AA8
A
95 103Right-handed alpha
Helix 9
AA9
A
104 106Right-handed 310
Helix 10
AB1
A
108 123Right-handed alpha
Helix 11
AB2
A
126 136Right-handed alpha
Helix 12
AB3
A
137 145Right-handed alpha
Helix 13
AB4
A
146 148Right-handed 310
Helix 14
AB5
A
150 165Right-handed alpha
Helix 15
AB6
A
168 178Right-handed alpha
Helix 16
AB7
A
179 187Right-handed alpha
Helix 17
AB8
A
188 190Right-handed 310
Helix 18
AB9
A
192 207Right-handed alpha
Helix 19
AC1
A
210 220Right-handed alpha
Helix 20
AC2
A
221 230Right-handed alpha
Helix 21
AC3
A
234 250Right-handed alpha
Helix 22
AC4
A
252 262Right-handed alpha
Helix 23
AC5
A
264 272Right-handed alpha
Helix 24
AC6
A
276 291Right-handed alpha
Helix 25
AC7
B
13 19Right-handed alpha
Helix 26
AC8
B
20 22Right-handed 310
Helix 27
AC9
B
24 40Right-handed alpha
Helix 28
AD1
B
42 52Right-handed alpha
Helix 29
AD2
B
54 62Right-handed alpha
Helix 30
AD3
B
66 81Right-handed alpha
Helix 31
AD4
B
84 94Right-handed alpha
Helix 32
AD5
B
95 103Right-handed alpha
Helix 33
AD6
B
104 106Right-handed 310
Helix 34
AD7
B
108 123Right-handed alpha
Helix 35
AD8
B
126 136Right-handed alpha
Helix 36
AD9
B
137 145Right-handed alpha
Helix 37
AE1
B
146 148Right-handed 310
Helix 38
AE2
B
150 165Right-handed alpha
Helix 39
AE3
B
168 178Right-handed alpha
Helix 40
AE4
B
179 188Right-handed alpha
Helix 41
AE5
B
192 207Right-handed alpha
Helix 42
AE6
B
210 220Right-handed alpha
Helix 43
AE7
B
222 230Right-handed alpha
Helix 44
AE8
B
234 250Right-handed alpha
Helix 45
AE9
B
252 262Right-handed alpha
Helix 46
AF1
B
263 272Right-handed alpha
Helix 47
AF2
B
276 291Right-handed alpha
Helix 48
AF3
C
13 19Right-handed alpha
Helix 49
AF4
C
24 39Right-handed alpha
Helix 50
AF5
C
42 52Right-handed alpha
Helix 51
AF6
C
53 61Right-handed alpha
Helix 52
AF7
C
62 64Right-handed 310
Helix 53
AF8
C
66 81Right-handed alpha
Helix 54
AF9
C
84 94Right-handed alpha
Helix 55
AG1
C
95 104Right-handed alpha
Helix 56
AG2
C
108 123Right-handed alpha
Helix 57
AG3
C
126 136Right-handed alpha
Helix 58
AG4
C
137 146Right-handed alpha
Helix 59
AG5
C
150 165Right-handed alpha
Helix 60
AG6
C
168 178Right-handed alpha
Helix 61
AG7
C
179 188Right-handed alpha
Helix 62
AG8
C
192 207Right-handed alpha
Helix 63
AG9
C
210 220Right-handed alpha
Helix 64
AH1
C
221 229Right-handed alpha
Helix 65
AH2
C
230 232Right-handed 310
Helix 66
AH3
C
234 250Right-handed alpha
Helix 67
AH4
C
252 262Right-handed alpha
Helix 68
AH5
C
263 272Right-handed alpha
Helix 69
AH6
C
276 290Right-handed alpha
Helix 70
AH7
D
13 20Right-handed alpha
Helix 71
AH8
D
25 39Right-handed alpha
Helix 72
AH9
D
42 52Right-handed alpha
Helix 73
AI1
D
53 61Right-handed alpha
Helix 74
AI2
D
62 64Right-handed 310
Helix 75
AI3
D
67 81Right-handed alpha
Helix 76
AI4
D
84 94Right-handed alpha
Helix 77
AI5
D
95 103Right-handed alpha
Helix 78
AI6
D
104 106Right-handed 310
Helix 79
AI7
D
108 123Right-handed alpha
Helix 80
AI8
D
126 136Right-handed alpha
Helix 81
AI9
D
137 145Right-handed alpha
Helix 82
AJ1
D
146 148Right-handed 310
Helix 83
AJ2
D
150 165Right-handed alpha
Helix 84
AJ3
D
168 178Right-handed alpha
Helix 85
AJ4
D
179 187Right-handed alpha
Helix 86
AJ5
D
188 190Right-handed 310
Helix 87
AJ6
D
192 207Right-handed alpha
Helix 88
AJ7
D
210 220Right-handed alpha
Helix 89
AJ8
D
222 230Right-handed alpha
Helix 90
AJ9
D
234 250Right-handed alpha
Helix 91
AK1
D
252 262Right-handed alpha
Helix 92
AK2
D
263 271Right-handed alpha
Helix 93
AK3
D
272 274Right-handed 310
Helix 94
AK4
D
276 290Right-handed alpha
Back to top of page
There are no sheets in PDB entry 5MFF
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il