Analysis of interatomic Contacts of Structural Units in PDB entry:
5MFI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MFI entry

There are 4 chains in PDB entry 5MFI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 12SER 250
B
 SER 11SER 250
C
 LYS 1ARG 8
D
 LYS 1ARG 6
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 38 helices in PDB entry 5MFI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 19Right-handed alpha
Helix 2
AA2
A
20 22Right-handed 310
Helix 3
AA3
A
24 40Right-handed alpha
Helix 4
AA4
A
42 52Right-handed alpha
Helix 5
AA5
A
54 65Right-handed alpha
Helix 6
AA6
A
66 81Right-handed alpha
Helix 7
AA7
A
84 94Right-handed alpha
Helix 8
AA8
A
96 107Right-handed alpha
Helix 9
AA9
A
108 124Right-handed alpha
Helix 10
AB1
A
126 136Right-handed alpha
Helix 11
AB2
A
138 149Right-handed alpha
Helix 12
AB3
A
150 165Right-handed alpha
Helix 13
AB4
A
168 178Right-handed alpha
Helix 14
AB5
A
180 188Right-handed alpha
Helix 15
AB6
A
192 208Right-handed alpha
Helix 16
AB7
A
210 220Right-handed alpha
Helix 17
AB8
A
221 229Right-handed alpha
Helix 18
AB9
A
230 232Right-handed 310
Helix 19
AC1
A
234 250Right-handed alpha
Helix 20
AC2
B
12 20Right-handed alpha
Helix 21
AC3
B
24 40Right-handed alpha
Helix 22
AC4
B
42 52Right-handed alpha
Helix 23
AC5
B
54 61Right-handed alpha
Helix 24
AC6
B
66 81Right-handed alpha
Helix 25
AC7
B
84 94Right-handed alpha
Helix 26
AC8
B
96 104Right-handed alpha
Helix 27
AC9
B
108 123Right-handed alpha
Helix 28
AD1
B
126 136Right-handed alpha
Helix 29
AD2
B
138 145Right-handed alpha
Helix 30
AD3
B
150 166Right-handed alpha
Helix 31
AD4
B
168 178Right-handed alpha
Helix 32
AD5
B
180 187Right-handed alpha
Helix 33
AD6
B
188 190Right-handed 310
Helix 34
AD7
B
192 208Right-handed alpha
Helix 35
AD8
B
210 220Right-handed alpha
Helix 36
AD9
B
221 229Right-handed alpha
Helix 37
AE1
B
230 232Right-handed 310
Helix 38
AE2
B
234 249Right-handed alpha
Back to top of page
There are no sheets in PDB entry 5MFI
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il