Analysis of interatomic Contacts of Structural Units in PDB entry:
5MFM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MFM entry

There are 4 chains in PDB entry 5MFM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 11ARG 353
B
 GLU 12ARG 353
C
 SER 11ARG 353
D
 GLU 12HIS 316
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are185 helices in PDB entry 5MFM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 19Right-handed alpha
Helix 2
AA2
A
20 22Right-handed 310
Helix 3
AA3
A
24 40Right-handed alpha
Helix 4
AA4
A
42 52Right-handed alpha
Helix 5
AA5
A
53 61Right-handed alpha
Helix 6
AA6
A
62 64Right-handed 310
Helix 7
AA7
A
66 81Right-handed alpha
Helix 8
AA8
A
84 94Right-handed alpha
Helix 9
AA9
A
95 103Right-handed alpha
Helix 10
AB1
A
104 106Right-handed 310
Helix 11
AB2
A
108 123Right-handed alpha
Helix 12
AB3
A
126 136Right-handed alpha
Helix 13
AB4
A
138 145Right-handed alpha
Helix 14
AB5
A
146 148Right-handed 310
Helix 15
AB6
A
150 165Right-handed alpha
Helix 16
AB7
A
168 178Right-handed alpha
Helix 17
AB8
A
180 187Right-handed alpha
Helix 18
AB9
A
188 190Right-handed 310
Helix 19
AC1
A
192 207Right-handed alpha
Helix 20
AC2
A
210 220Right-handed alpha
Helix 21
AC3
A
222 229Right-handed alpha
Helix 22
AC4
A
230 232Right-handed 310
Helix 23
AC5
A
234 250Right-handed alpha
Helix 24
AC6
A
252 262Right-handed alpha
Helix 25
AC7
A
263 271Right-handed alpha
Helix 26
AC8
A
272 274Right-handed 310
Helix 27
AC9
A
276 292Right-handed alpha
Helix 28
AD1
A
294 304Right-handed alpha
Helix 29
AD2
A
305 314Right-handed alpha
Helix 30
AD3
A
318 332Right-handed alpha
Helix 31
AD4
B
13 19Right-handed alpha
Helix 32
AD5
B
20 22Right-handed 310
Helix 33
AD6
B
24 40Right-handed alpha
Helix 34
AD7
B
42 53Right-handed alpha
Helix 35
AD8
B
53 61Right-handed alpha
Helix 36
AD9
B
62 64Right-handed 310
Helix 37
AE1
B
66 81Right-handed alpha
Helix 38
AE2
B
84 94Right-handed alpha
Helix 39
AE3
B
95 103Right-handed alpha
Helix 40
AE4
B
104 106Right-handed 310
Helix 41
AE5
B
108 123Right-handed alpha
Helix 42
AE6
B
126 136Right-handed alpha
Helix 43
AE7
B
138 145Right-handed alpha
Helix 44
AE8
B
146 148Right-handed 310
Helix 45
AE9
B
150 165Right-handed alpha
Helix 46
AF1
B
168 178Right-handed alpha
Helix 47
AF2
B
180 187Right-handed alpha
Helix 48
AF3
B
188 190Right-handed 310
Helix 49
AF4
B
192 207Right-handed alpha
Helix 50
AF5
B
210 220Right-handed alpha
Helix 51
AF6
B
222 229Right-handed alpha
Helix 52
AF7
B
230 232Right-handed 310
Helix 53
AF8
B
234 249Right-handed alpha
Helix 54
AF9
B
252 262Right-handed alpha
Helix 55
AG1
B
264 271Right-handed alpha
Helix 56
AG2
B
276 292Right-handed alpha
Helix 57
AG3
B
294 304Right-handed alpha
Helix 58
AG4
B
305 314Right-handed alpha
Helix 59
AG5
B
318 334Right-handed alpha
Helix 60
AG6
C
13 19Right-handed alpha
Helix 61
AG7
C
24 40Right-handed alpha
Helix 62
AG8
C
42 52Right-handed alpha
Helix 63
AG9
C
54 61Right-handed alpha
Helix 64
AH1
C
66 81Right-handed alpha
Helix 65
AH2
C
84 94Right-handed alpha
Helix 66
AH3
C
96 103Right-handed alpha
Helix 67
AH4
C
104 106Right-handed 310
Helix 68
AH5
C
108 123Right-handed alpha
Helix 69
AH6
C
126 136Right-handed alpha
Helix 70
AH7
C
138 145Right-handed alpha
Helix 71
AH8
C
146 148Right-handed 310
Helix 72
AH9
C
150 165Right-handed alpha
Helix 73
AI1
C
168 178Right-handed alpha
Helix 74
AI2
C
180 187Right-handed alpha
Helix 75
AI3
C
188 190Right-handed 310
Helix 76
AI4
C
192 207Right-handed alpha
Helix 77
AI5
C
210 220Right-handed alpha
Helix 78
AI6
C
222 229Right-handed alpha
Helix 79
AI7
C
230 232Right-handed 310
Helix 80
AI8
C
234 249Right-handed alpha
Helix 81
AI9
C
252 262Right-handed alpha
Helix 82
AJ1
C
263 271Right-handed alpha
Helix 83
AJ2
C
272 274Right-handed 310
Helix 84
AJ3
C
276 292Right-handed alpha
Helix 85
AJ4
C
294 304Right-handed alpha
Helix 86
AJ5
C
305 313Right-handed alpha
Helix 87
AJ6
C
314 316Right-handed 310
Helix 88
AJ7
C
318 333Right-handed alpha
Helix 89
AJ8
D
13 19Right-handed alpha
Helix 90
AJ9
D
20 22Right-handed 310
Helix 91
AK1
D
24 40Right-handed alpha
Helix 92
AK2
D
42 52Right-handed alpha
Helix 93
AK3
D
54 61Right-handed alpha
Helix 94
AK4
D
62 64Right-handed 310
Helix 95
AK5
D
66 81Right-handed alpha
Helix 96
AK6
D
84 94Right-handed alpha
Helix 97
AK7
D
95 103Right-handed alpha
Helix 98
AK8
D
104 106Right-handed 310
Helix 99
AK9
D
108 123Right-handed alpha
Helix 100
AL1
D
126 136Right-handed alpha
Helix 101
AL2
D
138 145Right-handed alpha
Helix 102
AL3
D
146 148Right-handed 310
Helix 103
AL4
D
150 165Right-handed alpha
Helix 104
AL5
D
168 178Right-handed alpha
Helix 105
AL6
D
180 187Right-handed alpha
Helix 106
AL7
D
188 190Right-handed 310
Helix 107
AL8
D
192 207Right-handed alpha
Helix 108
AL9
D
210 220Right-handed alpha
Helix 109
AM1
D
222 229Right-handed alpha
Helix 110
AM2
D
230 232Right-handed 310
Helix 111
AM3
D
234 249Right-handed alpha
Helix 112
AM4
D
252 262Right-handed alpha
Helix 113
AM5
D
264 271Right-handed alpha
Helix 114
AM6
D
272 274Right-handed 310
Helix 115
AM7
D
276 292Right-handed alpha
Helix 116
AM8
D
294 304Right-handed alpha
Helix 117
AM9
D
305 312Right-handed alpha
Helix 118
AN1
D
313 316Right-handed 310
Helix 119
AN2
D
318 334Right-handed alpha
Helix 120
AN3
E
13 19Right-handed alpha
Helix 121
AN4
E
20 22Right-handed 310
Helix 122
AN5
E
24 40Right-handed alpha
Helix 123
AN6
E
42 52Right-handed alpha
Helix 124
AN7
E
53 61Right-handed alpha
Helix 125
AN8
E
62 64Right-handed 310
Helix 126
AN9
E
66 81Right-handed alpha
Helix 127
AO1
E
84 94Right-handed alpha
Helix 128
AO2
E
96 103Right-handed alpha
Helix 129
AO3
E
104 106Right-handed 310
Helix 130
AO4
E
108 123Right-handed alpha
Helix 131
AO5
E
126 136Right-handed alpha
Helix 132
AO6
E
137 145Right-handed alpha
Helix 133
AO7
E
146 148Right-handed 310
Helix 134
AO8
E
150 165Right-handed alpha
Helix 135
AO9
E
168 178Right-handed alpha
Helix 136
AP1
E
180 187Right-handed alpha
Helix 137
AP2
E
192 207Right-handed alpha
Helix 138
AP3
E
210 220Right-handed alpha
Helix 139
AP4
E
222 229Right-handed alpha
Helix 140
AP5
E
234 249Right-handed alpha
Helix 141
AP6
E
252 262Right-handed alpha
Helix 142
AP7
E
264 271Right-handed alpha
Helix 143
AP8
E
276 292Right-handed alpha
Helix 144
AP9
E
294 305Right-handed alpha
Helix 145
AQ1
E
307 313Right-handed alpha
Helix 146
AQ2
E
314 316Right-handed 310
Helix 147
AQ3
E
318 333Right-handed alpha
Helix 148
AQ4
F
13 19Right-handed alpha
Helix 149
AQ5
F
20 22Right-handed 310
Helix 150
AQ6
F
24 40Right-handed alpha
Helix 151
AQ7
F
42 52Right-handed alpha
Helix 152
AQ8
F
54 61Right-handed alpha
Helix 153
AQ9
F
62 64Right-handed 310
Helix 154
AR1
F
66 81Right-handed alpha
Helix 155
AR2
F
84 93Right-handed alpha
Helix 156
AR3
F
96 103Right-handed alpha
Helix 157
AR4
F
104 106Right-handed 310
Helix 158
AR5
F
108 123Right-handed alpha
Helix 159
AR6
F
126 136Right-handed alpha
Helix 160
AR7
F
137 145Right-handed alpha
Helix 161
AR8
F
146 148Right-handed 310
Helix 162
AR9
F
150 165Right-handed alpha
Helix 163
AS1
F
168 178Right-handed alpha
Helix 164
AS2
F
180 187Right-handed alpha
Helix 165
AS3
F
188 190Right-handed 310
Helix 166
AS4
F
192 207Right-handed alpha
Helix 167
AS5
F
210 220Right-handed alpha
Helix 168
AS6
F
221 229Right-handed alpha
Helix 169
AS7
F
230 232Right-handed 310
Helix 170
AS8
F
234 249Right-handed alpha
Helix 171
AS9
F
252 262Right-handed alpha
Helix 172
AT1
F
264 271Right-handed alpha
Helix 173
AT2
F
272 274Right-handed 310
Helix 174
AT3
F
276 292Right-handed alpha
Helix 175
AT4
F
294 304Right-handed alpha
Helix 176
AT5
F
306 313Right-handed alpha
Helix 177
AT6
F
314 316Right-handed 310
Helix 178
AT7
F
318 333Right-handed alpha
Helix 179
AT8
P
295 305Right-handed alpha
Helix 180
AT9
P
305 313Right-handed alpha
Helix 181
AU1
P
327 332Right-handed alpha
Helix 182
AU2
Q
294 305Right-handed alpha
Helix 183
AU3
Q
306 313Right-handed alpha
Helix 184
AU4
Q
314 316Right-handed 310
Helix 185
AU5
Q
322 334Right-handed alpha
Back to top of page
There are no sheets in PDB entry 5MFM
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il