Analysis of interatomic Contacts of Structural Units in PDB entry:
5MFV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MFV entry

There are 2 chains in PDB entry 5MFV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 432GLY 801
B
 THR 433PRO 805
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5MFV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
455 458Right-handed 310
Helix 2
AA2
A
462 476Right-handed alpha
Helix 3
AA3
A
499 507Right-handed alpha
Helix 4
AA4
A
520 525Right-handed alpha
Helix 5
AA5
A
670 676Right-handed alpha
Helix 6
AA6
A
688 697Right-handed alpha
Helix 7
AA7
A
699 710Right-handed alpha
Helix 8
AA8
A
710 715Right-handed alpha
Helix 9
AA9
A
720 731Right-handed alpha
Helix 10
AB1
A
739 749Right-handed alpha
Helix 11
AB2
A
773 788Right-handed alpha
Helix 12
AB3
A
789 800Right-handed alpha
Helix 13
AB4
B
455 458Right-handed 310
Helix 14
AB5
B
462 476Right-handed alpha
Helix 15
AB6
B
499 507Right-handed alpha
Helix 16
AB7
B
520 525Right-handed alpha
Helix 17
AB8
B
670 676Right-handed alpha
Helix 18
AB9
B
688 697Right-handed alpha
Helix 19
AC1
B
699 715Right-handed alpha
Helix 20
AC2
B
720 731Right-handed alpha
Helix 21
AC3
B
739 747Right-handed alpha
Helix 22
AC4
B
773 788Right-handed alpha
Helix 23
AC5
B
789 800Right-handed alpha
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There are 6 sheets in PDB entry 5MFV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
479 483first strand
Strand 2
A
434 438parallel
Strand 3
A
512 513parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
446 447first strand
Strand 2
A
460 461anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
681 683first strand
Strand 2
A
733 738parallel
Strand 3
A
527 543anti-parallel
Strand 4
A
752 769anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
479 483first strand
Strand 2
B
434 438parallel
Strand 3
B
512 513parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
446 447first strand
Strand 2
B
460 461anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
681 683first strand
Strand 2
B
733 738parallel
Strand 3
B
527 543anti-parallel
Strand 4
B
752 769anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il