Analysis of interatomic Contacts of Structural Units in PDB entry:
5MG8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MG8 entry

There are 4 chains in PDB entry 5MG8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 408ARG 689
B
 SER 449SER 712
C
 ASN 411ASP 690
D
 GLY 448SER 711
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 5MG8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
410 433Right-handed alpha
Helix 2
AA2
A
436 449Right-handed alpha
Helix 3
AA3
A
450 453Right-handed 310
Helix 4
AA4
A
460 465Right-handed 310
Helix 5
AA5
A
469 471Right-handed 310
Helix 6
AA6
A
472 486Right-handed alpha
Helix 7
AA7
A
492 507Right-handed alpha
Helix 8
AA8
A
523 527Right-handed 310
Helix 9
AA9
A
532 539Right-handed alpha
Helix 10
AB1
A
552 563Right-handed alpha
Helix 11
AB2
A
564 567Right-handed 310
Helix 12
AB3
A
576 585Right-handed alpha
Helix 13
AB4
A
636 689Right-handed alpha
Helix 14
AB5
B
450 492Right-handed alpha
Helix 15
AB6
B
501 512Right-handed alpha
Helix 16
AB7
B
513 515Right-handed 310
Helix 17
AB8
B
523 529Right-handed 310
Helix 18
AB9
B
531 540Right-handed alpha
Helix 19
AC1
B
552 555Right-handed 310
Helix 20
AC2
B
561 563Right-handed 310
Helix 21
AC3
B
564 572Right-handed alpha
Helix 22
AC4
B
574 578Right-handed 310
Helix 23
AC5
B
583 598Right-handed alpha
Helix 24
AC6
B
613 617Right-handed 310
Helix 25
AC7
B
625 627Right-handed 310
Helix 26
AC8
B
633 645Right-handed alpha
Helix 27
AC9
B
654 664Right-handed alpha
Helix 28
AD1
C
412 433Right-handed alpha
Helix 29
AD2
C
436 449Right-handed alpha
Helix 30
AD3
C
450 453Right-handed 310
Helix 31
AD4
C
460 465Right-handed 310
Helix 32
AD5
C
469 471Right-handed 310
Helix 33
AD6
C
472 486Right-handed alpha
Helix 34
AD7
C
492 507Right-handed alpha
Helix 35
AD8
C
523 527Right-handed 310
Helix 36
AD9
C
532 539Right-handed alpha
Helix 37
AE1
C
552 564Right-handed alpha
Helix 38
AE2
C
565 567Right-handed 310
Helix 39
AE3
C
576 584Right-handed alpha
Helix 40
AE4
C
635 690Right-handed alpha
Helix 41
AE5
D
449 454Right-handed alpha
Helix 42
AE6
D
454 498Right-handed alpha
Helix 43
AE7
D
501 512Right-handed alpha
Helix 44
AE8
D
515 519Right-handed 310
Helix 45
AE9
D
523 529Right-handed 310
Helix 46
AF1
D
531 540Right-handed alpha
Helix 47
AF2
D
552 555Right-handed 310
Helix 48
AF3
D
561 563Right-handed 310
Helix 49
AF4
D
564 572Right-handed alpha
Helix 50
AF5
D
574 578Right-handed 310
Helix 51
AF6
D
583 598Right-handed alpha
Helix 52
AF7
D
613 617Right-handed 310
Helix 53
AF8
D
624 627Right-handed 310
Helix 54
AF9
D
633 645Right-handed alpha
Helix 55
AG1
D
654 665Right-handed alpha
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There are 8 sheets in PDB entry 5MG8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 458first strand
Strand 2
A
487 490anti-parallel
Strand 3
A
512 515parallel
Strand 4
B
693 698anti-parallel
Strand 5
B
683 686anti-parallel
Strand 6
B
671 675anti-parallel
Strand 7
B
649 651parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
466 467first strand
Strand 2
A
549 550anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
543 544first strand
Strand 2
A
569 571anti-parallel
Strand 3
A
597 600parallel
Strand 4
A
603 609anti-parallel
Strand 5
A
617 623anti-parallel
Strand 6
B
603 605anti-parallel
Strand 7
B
579 581parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
629 631first strand
Strand 2
B
557 559anti-parallel
Strand 3
B
708 709parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
457 458first strand
Strand 2
C
487 490anti-parallel
Strand 3
C
512 515parallel
Strand 4
D
693 698anti-parallel
Strand 5
D
683 686anti-parallel
Strand 6
D
671 675anti-parallel
Strand 7
D
649 651parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
466 467first strand
Strand 2
C
549 550anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
543 544first strand
Strand 2
C
569 571anti-parallel
Strand 3
C
597 600parallel
Strand 4
C
603 609anti-parallel
Strand 5
C
617 623anti-parallel
Strand 6
D
603 605anti-parallel
Strand 7
D
579 581parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
629 631first strand
Strand 2
D
557 559anti-parallel
Strand 3
D
708 709parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il