Analysis of interatomic Contacts of Structural Units in PDB entry:
5MGA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MGA entry

There are 2 chains in PDB entry 5MGA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 3ASN 1300
B
 A -19 G 0
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 5MGA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 34Right-handed alpha
Helix 2
AA2
A
35 69Right-handed alpha
Helix 3
AA3
A
75 87Right-handed alpha
Helix 4
AA4
A
91 116Right-handed alpha
Helix 5
AA5
A
124 128Right-handed 310
Helix 6
AA6
A
136 144Right-handed alpha
Helix 7
AA7
A
161 171Right-handed alpha
Helix 8
AA8
A
175 178Right-handed 310
Helix 9
AA9
A
179 190Right-handed alpha
Helix 10
AB1
A
198 205Right-handed alpha
Helix 11
AB2
A
206 223Right-handed alpha
Helix 12
AB3
A
231 238Right-handed 310
Helix 13
AB4
A
265 272Right-handed 310
Helix 14
AB5
A
274 287Right-handed alpha
Helix 15
AB6
A
299 309Right-handed alpha
Helix 16
AB7
A
315 320Right-handed 310
Helix 17
AB8
A
344 362Right-handed alpha
Helix 18
AB9
A
372 379Right-handed alpha
Helix 19
AC1
A
399 407Right-handed alpha
Helix 20
AC2
A
414 420Right-handed alpha
Helix 21
AC3
A
460 464Right-handed alpha
Helix 22
AC4
A
470 478Right-handed alpha
Helix 23
AC5
A
479 491Right-handed alpha
Helix 24
AC6
A
493 498Right-handed alpha
Helix 25
AC7
A
519 539Right-handed alpha
Helix 26
AC8
A
566 573Right-handed alpha
Helix 27
AC9
A
574 587Right-handed alpha
Helix 28
AD1
A
610 612Right-handed 310
Helix 29
AD2
A
613 618Right-handed alpha
Helix 30
AD3
A
635 638Right-handed 310
Helix 31
AD4
A
642 649Right-handed alpha
Helix 32
AD5
A
664 674Right-handed alpha
Helix 33
AD6
A
678 683Right-handed alpha
Helix 34
AD7
A
685 693Right-handed alpha
Helix 35
AD8
A
713 731Right-handed alpha
Helix 36
AD9
A
734 738Right-handed 310
Helix 37
AE1
A
749 761Right-handed alpha
Helix 38
AE2
A
771 780Right-handed alpha
Helix 39
AE3
A
790 794Right-handed 310
Helix 40
AE4
A
802 811Right-handed alpha
Helix 41
AE5
A
813 819Right-handed alpha
Helix 42
AE6
A
870 875Right-handed 310
Helix 43
AE7
A
895 907Right-handed alpha
Helix 44
AE8
A
953 970Right-handed alpha
Helix 45
AE9
A
977 1000Right-handed alpha
Helix 46
AF1
A
1023 1037Right-handed alpha
Helix 47
AF2
A
1105 1110Right-handed alpha
Helix 48
AF3
A
1169 1181Right-handed alpha
Helix 49
AF4
A
1206 1215Right-handed alpha
Helix 50
AF5
A
1242 1246Right-handed 310
Helix 51
AF6
A
1253 1275Right-handed alpha
Helix 52
AF7
A
1287 1297Right-handed alpha
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There are 4 sheets in PDB entry 5MGA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
596 598first strand
Strand 2
A
829 833anti-parallel
Strand 3
A
877 886anti-parallel
Strand 4
A
13 23anti-parallel
Strand 5
A
783 789anti-parallel
Strand 6
A
627 633anti-parallel
Strand 7
A
619 624anti-parallel
Strand 8
A
650 661anti-parallel
Strand 9
A
762 770anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
596 598first strand
Strand 2
A
829 833anti-parallel
Strand 3
A
877 886anti-parallel
Strand 4
A
822 824anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
935 940first strand
Strand 2
A
925 929anti-parallel
Strand 3
A
912 917anti-parallel
Strand 4
A
1001 1006parallel
Strand 5
A
1074 1077parallel
Strand 6
A
1070 1071anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1115 1118first strand
Strand 2
A
1123 1128anti-parallel
Strand 3
A
1142 1144anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il