Analysis of interatomic Contacts of Structural Units in PDB entry:
5MGS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MGS entry

There are 8 chains in PDB entry 5MGS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 91	LEU 214
B	GLY 90	VAL 217
C	LEU 91	PRO 216
D	GLY 90	LEU 214
E	GLY 90	LEU 214
F	LEU 91	LEU 214
G	LEU 91	LEU 214
H	GLY 90	ARG 218

There are 16 helices in PDB entry 5MGS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	114	125	Right-handed alpha
Helix 2	AA2	A	134	143	Right-handed alpha
Helix 3	AA3	B	114	125	Right-handed alpha
Helix 4	AA4	B	134	143	Right-handed alpha
Helix 5	AA5	C	114	125	Right-handed alpha
Helix 6	AA6	C	134	143	Right-handed alpha
Helix 7	AA7	D	114	125	Right-handed alpha
Helix 8	AA8	D	134	143	Right-handed alpha
Helix 9	AA9	E	114	125	Right-handed alpha
Helix 10	AB1	E	134	143	Right-handed alpha
Helix 11	AB2	F	114	125	Right-handed alpha
Helix 12	AB3	F	134	143	Right-handed alpha
Helix 13	AB4	G	114	125	Right-handed alpha
Helix 14	AB5	G	134	143	Right-handed alpha
Helix 15	AB6	H	114	125	Right-handed alpha
Helix 16	AB7	H	134	143	Right-handed alpha

There are 16 sheets in PDB entry 5MGS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	101	first strand
Strand 2	A	104	108	anti-parallel
Strand 3	A	207	213	anti-parallel
Strand 4	A	152	159	parallel
Strand 5	A	164	167	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	129	first strand
Strand 2	A	207	213	anti-parallel
Strand 3	A	152	159	parallel
Strand 4	A	188	192	anti-parallel
Strand 5	A	197	201	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	101	first strand
Strand 2	B	104	108	anti-parallel
Strand 3	B	207	213	anti-parallel
Strand 4	B	152	159	parallel
Strand 5	B	164	167	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	129	first strand
Strand 2	B	207	213	anti-parallel
Strand 3	B	152	159	parallel
Strand 4	B	188	192	anti-parallel
Strand 5	B	197	201	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	101	first strand
Strand 2	C	104	108	anti-parallel
Strand 3	C	207	213	anti-parallel
Strand 4	C	152	159	parallel
Strand 5	C	164	167	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	129	first strand
Strand 2	C	207	213	anti-parallel
Strand 3	C	152	159	parallel
Strand 4	C	188	192	anti-parallel
Strand 5	C	197	201	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	101	first strand
Strand 2	D	104	108	anti-parallel
Strand 3	D	207	213	anti-parallel
Strand 4	D	152	159	parallel
Strand 5	D	164	167	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	129	first strand
Strand 2	D	207	213	anti-parallel
Strand 3	D	152	159	parallel
Strand 4	D	188	192	anti-parallel
Strand 5	D	197	201	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	99	101	first strand
Strand 2	E	104	108	anti-parallel
Strand 3	E	207	213	anti-parallel
Strand 4	E	152	159	parallel
Strand 5	E	164	167	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	128	129	first strand
Strand 2	E	207	213	anti-parallel
Strand 3	E	152	159	parallel
Strand 4	E	188	192	anti-parallel
Strand 5	E	197	201	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	99	101	first strand
Strand 2	F	104	108	anti-parallel
Strand 3	F	207	213	anti-parallel
Strand 4	F	152	159	parallel
Strand 5	F	164	167	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	128	129	first strand
Strand 2	F	207	213	anti-parallel
Strand 3	F	152	159	parallel
Strand 4	F	188	192	anti-parallel
Strand 5	F	197	201	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	99	101	first strand
Strand 2	G	104	108	anti-parallel
Strand 3	G	207	213	anti-parallel
Strand 4	G	152	159	parallel
Strand 5	G	164	167	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	128	129	first strand
Strand 2	G	207	213	anti-parallel
Strand 3	G	152	159	parallel
Strand 4	G	188	192	anti-parallel
Strand 5	G	197	201	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	99	101	first strand
Strand 2	H	104	108	anti-parallel
Strand 3	H	207	213	anti-parallel
Strand 4	H	152	159	parallel
Strand 5	H	164	167	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	128	129	first strand
Strand 2	H	207	213	anti-parallel
Strand 3	H	152	159	parallel
Strand 4	H	188	192	anti-parallel
Strand 5	H	197	201	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MGS

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MGS