Analysis of interatomic Contacts of Structural Units in PDB entry:
5MGY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MGY entry

There are 5 chains in PDB entry 5MGY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	MET 29	VAL 348
B	MET 29	VAL 348
G	MET 29	GLY 345
A	MET 29	VAL 348
C	MET 29	GLU 129

There are 84 helices in PDB entry 5MGY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	60	80	Right-handed alpha
Helix 2	AA2	H	86	94	Right-handed alpha
Helix 3	AA3	H	103	120	Right-handed alpha
Helix 4	AA4	H	128	135	Right-handed alpha
Helix 5	AA5	H	148	158	Right-handed alpha
Helix 6	AA6	H	159	162	Right-handed 310
Helix 7	AA7	H	184	200	Right-handed alpha
Helix 8	AA8	H	292	319	Right-handed alpha
Helix 9	AA9	H	337	345	Right-handed alpha
Helix 10	AB1	B	60	80	Right-handed alpha
Helix 11	AB2	B	86	93	Right-handed alpha
Helix 12	AB3	B	103	120	Right-handed alpha
Helix 13	AB4	B	128	133	Right-handed alpha
Helix 14	AB5	B	149	157	Right-handed alpha
Helix 15	AB6	B	158	159	Right-handed 310
Helix 16	AB7	B	160	162	Right-handed 310
Helix 17	AB8	B	184	200	Right-handed alpha
Helix 18	AB9	B	292	319	Right-handed alpha
Helix 19	AC1	B	337	345	Right-handed alpha
Helix 20	AC2	G	60	80	Right-handed alpha
Helix 21	AC3	G	86	94	Right-handed alpha
Helix 22	AC4	G	103	120	Right-handed alpha
Helix 23	AC5	G	128	135	Right-handed alpha
Helix 24	AC6	G	148	157	Right-handed alpha
Helix 25	AC7	G	158	159	Right-handed 310
Helix 26	AC8	G	160	162	Right-handed 310
Helix 27	AC9	G	184	200	Right-handed alpha
Helix 28	AD1	G	292	307	Right-handed alpha
Helix 29	AD2	G	307	319	Right-handed alpha
Helix 30	AD3	G	337	345	Right-handed alpha
Helix 31	AD4	A	60	80	Right-handed alpha
Helix 32	AD5	A	86	94	Right-handed alpha
Helix 33	AD6	A	103	120	Right-handed alpha
Helix 34	AD7	A	128	134	Right-handed alpha
Helix 35	AD8	A	149	157	Right-handed alpha
Helix 36	AD9	A	158	159	Right-handed 310
Helix 37	AE1	A	160	162	Right-handed 310
Helix 38	AE2	A	184	200	Right-handed alpha
Helix 39	AE3	A	292	307	Right-handed alpha
Helix 40	AE4	A	307	319	Right-handed alpha
Helix 41	AE5	A	337	345	Right-handed alpha
Helix 42	AE6	C	60	80	Right-handed alpha
Helix 43	AE7	C	86	94	Right-handed alpha
Helix 44	AE8	C	103	120	Right-handed alpha
Helix 45	AE9	C	128	135	Right-handed alpha
Helix 46	AF1	C	148	157	Right-handed alpha
Helix 47	AF2	C	158	159	Right-handed 310
Helix 48	AF3	C	160	162	Right-handed 310
Helix 49	AF4	C	184	200	Right-handed alpha
Helix 50	AF5	C	292	307	Right-handed alpha
Helix 51	AF6	C	307	319	Right-handed alpha
Helix 52	AF7	C	337	345	Right-handed alpha
Helix 53	AF8	D	60	80	Right-handed alpha
Helix 54	AF9	D	86	94	Right-handed alpha
Helix 55	AG1	D	103	120	Right-handed alpha
Helix 56	AG2	D	128	135	Right-handed alpha
Helix 57	AG3	D	148	157	Right-handed alpha
Helix 58	AG4	D	158	159	Right-handed 310
Helix 59	AG5	D	160	162	Right-handed 310
Helix 60	AG6	D	184	200	Right-handed alpha
Helix 61	AG7	D	292	318	Right-handed alpha
Helix 62	AG8	D	337	345	Right-handed alpha
Helix 63	AG9	E	60	80	Right-handed alpha
Helix 64	AH1	E	86	94	Right-handed alpha
Helix 65	AH2	E	103	120	Right-handed alpha
Helix 66	AH3	E	128	135	Right-handed alpha
Helix 67	AH4	E	148	157	Right-handed alpha
Helix 68	AH5	E	158	159	Right-handed 310
Helix 69	AH6	E	160	162	Right-handed 310
Helix 70	AH7	E	184	200	Right-handed alpha
Helix 71	AH8	E	292	307	Right-handed alpha
Helix 72	AH9	E	307	319	Right-handed alpha
Helix 73	AI1	E	337	345	Right-handed alpha
Helix 74	AI2	F	60	80	Right-handed alpha
Helix 75	AI3	F	86	94	Right-handed alpha
Helix 76	AI4	F	103	120	Right-handed alpha
Helix 77	AI5	F	128	134	Right-handed alpha
Helix 78	AI6	F	148	157	Right-handed alpha
Helix 79	AI7	F	158	159	Right-handed 310
Helix 80	AI8	F	160	162	Right-handed 310
Helix 81	AI9	F	184	200	Right-handed alpha
Helix 82	AJ1	F	261	265	Right-handed 310
Helix 83	AJ2	F	292	319	Right-handed alpha
Helix 84	AJ3	F	337	345	Right-handed alpha

There are 26 sheets in PDB entry 5MGY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	35	42	first strand
Strand 2	H	47	54	anti-parallel
Strand 3	H	205	209	anti-parallel
Strand 4	H	212	216	anti-parallel
Strand 5	H	248	253	anti-parallel
Strand 6	H	283	290	anti-parallel
Strand 7	H	321	327	anti-parallel
Strand 8	H	332	336	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	99	101	first strand
Strand 2	H	170	173	anti-parallel
Strand 3	H	164	167	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	225	231	first strand
Strand 2	H	239	245	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	260	262	first strand
Strand 2	H	265	267	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	42	first strand
Strand 2	B	47	54	anti-parallel
Strand 3	B	205	209	anti-parallel
Strand 4	B	212	216	anti-parallel
Strand 5	B	248	253	anti-parallel
Strand 6	B	283	290	anti-parallel
Strand 7	B	321	327	anti-parallel
Strand 8	B	332	336	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	101	first strand
Strand 2	B	170	173	anti-parallel
Strand 3	B	164	167	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	231	first strand
Strand 2	B	239	245	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	35	43	first strand
Strand 2	G	46	54	anti-parallel
Strand 3	G	205	209	anti-parallel
Strand 4	G	212	216	anti-parallel
Strand 5	G	248	253	anti-parallel
Strand 6	G	283	290	anti-parallel
Strand 7	G	321	326	anti-parallel
Strand 8	G	333	336	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	99	101	first strand
Strand 2	G	170	173	anti-parallel
Strand 3	G	164	167	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	226	229	first strand
Strand 2	G	241	244	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	42	first strand
Strand 2	A	47	54	anti-parallel
Strand 3	A	205	209	anti-parallel
Strand 4	A	212	216	anti-parallel
Strand 5	A	248	253	anti-parallel
Strand 6	A	283	290	anti-parallel
Strand 7	A	321	327	anti-parallel
Strand 8	A	332	336	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	101	first strand
Strand 2	A	170	173	anti-parallel
Strand 3	A	164	167	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	233	first strand
Strand 2	A	237	245	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	42	first strand
Strand 2	C	47	54	anti-parallel
Strand 3	C	205	209	anti-parallel
Strand 4	C	212	216	anti-parallel
Strand 5	C	248	254	anti-parallel
Strand 6	C	283	290	anti-parallel
Strand 7	C	321	327	anti-parallel
Strand 8	C	332	336	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	101	first strand
Strand 2	C	170	173	anti-parallel
Strand 3	C	164	167	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	231	first strand
Strand 2	C	239	244	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	42	first strand
Strand 2	D	47	54	anti-parallel
Strand 3	D	205	209	anti-parallel
Strand 4	D	212	216	anti-parallel
Strand 5	D	248	253	anti-parallel
Strand 6	D	283	290	anti-parallel
Strand 7	D	321	327	anti-parallel
Strand 8	D	332	336	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	101	first strand
Strand 2	D	170	173	anti-parallel
Strand 3	D	164	167	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	226	231	first strand
Strand 2	D	239	244	anti-parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	43	first strand
Strand 2	E	46	54	anti-parallel
Strand 3	E	205	209	anti-parallel
Strand 4	E	212	216	anti-parallel
Strand 5	E	248	253	anti-parallel
Strand 6	E	283	290	anti-parallel
Strand 7	E	321	327	anti-parallel
Strand 8	E	332	336	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	98	101	first strand
Strand 2	E	170	173	anti-parallel
Strand 3	E	164	167	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	225	231	first strand
Strand 2	E	239	245	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	260	261	first strand
Strand 2	E	266	267	anti-parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	43	first strand
Strand 2	F	46	54	anti-parallel
Strand 3	F	205	209	anti-parallel
Strand 4	F	212	216	anti-parallel
Strand 5	F	248	253	anti-parallel
Strand 6	F	283	290	anti-parallel
Strand 7	F	321	327	anti-parallel
Strand 8	F	332	336	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	98	101	first strand
Strand 2	F	170	173	anti-parallel
Strand 3	F	164	167	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	225	231	first strand
Strand 2	F	239	245	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MGY

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MGY