Analysis of interatomic Contacts of Structural Units in PDB entry:
5MHA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MHA entry

There are 2 chains in PDB entry 5MHA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 308
B
 MET 1VAL 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5MHA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 15Right-handed 310
Helix 2
AA2
A
17 25Right-handed alpha
Helix 3
AA3
A
53 59Right-handed 310
Helix 4
AA4
A
73 81Right-handed alpha
Helix 5
AA5
A
91 109Right-handed alpha
Helix 6
AA6
A
109 119Right-handed alpha
Helix 7
AA7
A
144 157Right-handed alpha
Helix 8
AA8
A
179 181Right-handed 310
Helix 9
AA9
A
182 188Right-handed alpha
Helix 10
AB1
A
208 215Right-handed alpha
Helix 11
AB2
A
226 230Right-handed 310
Helix 12
AB3
A
231 241Right-handed alpha
Helix 13
AB4
A
261 266Right-handed 310
Helix 14
AB5
A
281 300Right-handed alpha
Helix 15
AB6
B
11 15Right-handed 310
Helix 16
AB7
B
17 25Right-handed alpha
Helix 17
AB8
B
53 59Right-handed 310
Helix 18
AB9
B
73 81Right-handed alpha
Helix 19
AC1
B
91 109Right-handed alpha
Helix 20
AC2
B
109 119Right-handed alpha
Helix 21
AC3
B
144 157Right-handed alpha
Helix 22
AC4
B
179 181Right-handed 310
Helix 23
AC5
B
182 188Right-handed alpha
Helix 24
AC6
B
208 215Right-handed alpha
Helix 25
AC7
B
226 230Right-handed 310
Helix 26
AC8
B
231 241Right-handed alpha
Helix 27
AC9
B
261 266Right-handed 310
Helix 28
AD1
B
281 299Right-handed alpha
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There are 4 sheets in PDB entry 5MHA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 35first strand
Strand 2
A
5 9parallel
Strand 3
A
45 49parallel
Strand 4
A
61 64parallel
Strand 5
A
83 85parallel
Strand 6
A
306 308anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 178first strand
Strand 2
A
160 164parallel
Strand 3
A
137 141parallel
Strand 4
A
192 195parallel
Strand 5
A
220 223parallel
Strand 6
A
246 249parallel
Strand 7
A
269 271parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 35first strand
Strand 2
B
5 9parallel
Strand 3
B
45 49parallel
Strand 4
B
61 64parallel
Strand 5
B
83 85parallel
Strand 6
B
306 308anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 178first strand
Strand 2
B
160 164parallel
Strand 3
B
137 141parallel
Strand 4
B
192 195parallel
Strand 5
B
220 223parallel
Strand 6
B
246 249parallel
Strand 7
B
269 271parallel
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