Analysis of interatomic Contacts of Structural Units in PDB entry:
5MHJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MHJ entry

There are 4 chains in PDB entry 5MHJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 293THR 486
B
 ASP 294GLY 487
E
 C 2 C 10
F
 G 31 G 39
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5MHJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
294 299Right-handed alpha
Helix 2
AA2
A
300 305Right-handed alpha
Helix 3
AA3
A
342 356Right-handed alpha
Helix 4
AA4
A
363 367Right-handed 310
Helix 5
AA5
A
368 380Right-handed alpha
Helix 6
AA6
A
386 393Right-handed alpha
Helix 7
AA7
A
397 412Right-handed alpha
Helix 8
AA8
A
431 439Right-handed alpha
Helix 9
AA9
A
440 442Right-handed 310
Helix 10
AB1
A
443 455Right-handed alpha
Helix 11
AB2
A
459 485Right-handed alpha
Helix 12
AB3
B
295 299Right-handed alpha
Helix 13
AB4
B
300 306Right-handed alpha
Helix 14
AB5
B
342 355Right-handed alpha
Helix 15
AB6
B
363 367Right-handed 310
Helix 16
AB7
B
368 382Right-handed alpha
Helix 17
AB8
B
386 393Right-handed alpha
Helix 18
AB9
B
397 411Right-handed alpha
Helix 19
AC1
B
431 439Right-handed alpha
Helix 20
AC2
B
440 442Right-handed 310
Helix 21
AC3
B
443 455Right-handed alpha
Helix 22
AC4
B
459 487Right-handed alpha
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There are 2 sheets in PDB entry 5MHJ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 328first strand
Strand 2
A
335 337anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
326 328first strand
Strand 2
B
335 337anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il