Analysis of interatomic Contacts of Structural Units in PDB entry:
5MHM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MHM entry

There are 2 chains in PDB entry 5MHM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 15	GLN 726
B	PRO 15	THR 625

There are 33 helices in PDB entry 5MHM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	40	44	Right-handed 310
Helix 2	AA2	A	58	64	Right-handed alpha
Helix 3	AA3	A	110	114	Right-handed 310
Helix 4	AA4	A	175	178	Right-handed 310
Helix 5	AA5	A	197	205	Right-handed alpha
Helix 6	AA6	A	233	245	Right-handed alpha
Helix 7	AA7	A	248	252	Right-handed 310
Helix 8	AA8	A	254	266	Right-handed alpha
Helix 9	AA9	A	288	292	Right-handed 310
Helix 10	AB1	A	295	306	Right-handed alpha
Helix 11	AB2	A	313	329	Right-handed alpha
Helix 12	AB3	A	414	419	Right-handed alpha
Helix 13	AB4	A	427	437	Right-handed alpha
Helix 14	AB5	A	477	482	Right-handed alpha
Helix 15	AB6	A	487	501	Right-handed alpha
Helix 16	AB7	A	590	595	Right-handed alpha
Helix 17	AB8	A	596	598	Right-handed 310
Helix 18	AB9	B	40	44	Right-handed 310
Helix 19	AC1	B	58	64	Right-handed alpha
Helix 20	AC2	B	110	114	Right-handed 310
Helix 21	AC3	B	175	178	Right-handed 310
Helix 22	AC4	B	197	205	Right-handed alpha
Helix 23	AC5	B	233	245	Right-handed alpha
Helix 24	AC6	B	248	252	Right-handed 310
Helix 25	AC7	B	254	266	Right-handed alpha
Helix 26	AC8	B	288	292	Right-handed 310
Helix 27	AC9	B	295	306	Right-handed alpha
Helix 28	AD1	B	313	329	Right-handed alpha
Helix 29	AD2	B	414	419	Right-handed alpha
Helix 30	AD3	B	427	437	Right-handed alpha
Helix 31	AD4	B	477	482	Right-handed alpha
Helix 32	AD5	B	487	501	Right-handed alpha
Helix 33	AD6	B	590	596	Right-handed alpha

There are 23 sheets in PDB entry 5MHM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	31	first strand
Strand 2	A	168	171	anti-parallel
Strand 3	A	155	165	anti-parallel
Strand 4	A	180	183	anti-parallel
Strand 5	A	74	77	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	31	first strand
Strand 2	A	168	171	anti-parallel
Strand 3	A	155	165	anti-parallel
Strand 4	A	99	104	anti-parallel
Strand 5	A	116	120	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	51	first strand
Strand 2	A	82	88	anti-parallel
Strand 3	A	141	147	anti-parallel
Strand 4	A	131	138	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	216	first strand
Strand 2	A	219	226	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	277	first strand
Strand 2	A	309	312	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	412	413	first strand
Strand 2	A	391	395	anti-parallel
Strand 3	A	368	380	anti-parallel
Strand 4	A	332	342	anti-parallel
Strand 5	A	463	467	anti-parallel
Strand 6	A	474	476	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	352	first strand
Strand 2	A	438	441	parallel
Strand 3	A	454	456	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	402	403	first strand
Strand 2	A	406	407	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	518	525	first strand
Strand 2	A	533	541	anti-parallel
Strand 3	A	581	589	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	564	577	first strand
Strand 2	A	547	558	anti-parallel
Strand 3	A	603	612	anti-parallel
Strand 4	A	618	625	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	632	637	first strand
Strand 2	A	646	653	anti-parallel
Strand 3	A	688	695	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	673	683	first strand
Strand 2	A	660	669	anti-parallel
Strand 3	A	701	710	anti-parallel
Strand 4	A	715	725	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	31	first strand
Strand 2	B	168	171	anti-parallel
Strand 3	B	155	165	anti-parallel
Strand 4	B	180	183	anti-parallel
Strand 5	B	74	77	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	31	first strand
Strand 2	B	168	171	anti-parallel
Strand 3	B	155	165	anti-parallel
Strand 4	B	99	104	anti-parallel
Strand 5	B	116	120	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	81	88	anti-parallel
Strand 3	B	141	147	anti-parallel
Strand 4	B	131	138	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	216	first strand
Strand 2	B	219	226	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	277	first strand
Strand 2	B	309	312	parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	412	413	first strand
Strand 2	B	391	395	anti-parallel
Strand 3	B	368	380	anti-parallel
Strand 4	B	332	342	anti-parallel
Strand 5	B	463	467	anti-parallel
Strand 6	B	474	476	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	350	354	first strand
Strand 2	B	439	443	parallel
Strand 3	B	451	456	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	402	403	first strand
Strand 2	B	406	407	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	518	524	first strand
Strand 2	B	533	541	anti-parallel
Strand 3	B	581	589	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	564	577	first strand
Strand 2	B	547	558	anti-parallel
Strand 3	B	603	612	anti-parallel
Strand 4	B	618	626	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	673	683	first strand
Strand 2	B	660	669	anti-parallel
Strand 3	B	701	710	anti-parallel
Strand 4	B	715	725	anti-parallel
Strand 5	B	631	637	parallel
Strand 6	B	647	653	anti-parallel
Strand 7	B	688	694	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MHM

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MHM