Analysis of interatomic Contacts of Structural Units in PDB entry:
5MHS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MHS entry

There are 8 chains in PDB entry 5MHS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 308	ARG 470
B	LEU 308	ARG 470
C	LEU 308	ARG 470
D	ASP 1	ARG 214
E	GLN 1	GLU 221
F	ASP 1	PHE 212
G	ASP 1	PHE 212
H	VAL 2	TRP 113

There are 17 helices in PDB entry 5MHS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	327	332	Right-handed alpha
Helix 2	AA2	A	396	401	Right-handed 310
Helix 3	AA3	B	327	332	Right-handed alpha
Helix 4	AA4	B	396	401	Right-handed 310
Helix 5	AA5	C	327	332	Right-handed alpha
Helix 6	AA6	C	396	401	Right-handed 310
Helix 7	AA7	D	124	131	Right-handed alpha
Helix 8	AA8	D	186	190	Right-handed alpha
Helix 9	AA9	E	61	64	Right-handed 310
Helix 10	AB1	F	124	131	Right-handed alpha
Helix 11	AB2	F	186	190	Right-handed alpha
Helix 12	AB3	G	124	131	Right-handed alpha
Helix 13	AB4	G	186	190	Right-handed alpha
Helix 14	AB5	H	61	65	Right-handed 310
Helix 15	AB6	N	61	64	Right-handed 310
Helix 16	AB7	N	86	90	Right-handed 310
Helix 17	AB8	N	166	168	Right-handed 310

There are 36 sheets in PDB entry 5MHS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	310	311	first strand
Strand 2	B	323	326	parallel
Strand 3	B	315	318	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	315	318	first strand
Strand 2	A	323	326	anti-parallel
Strand 3	C	310	311	parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	375	first strand
Strand 2	A	455	458	anti-parallel
Strand 3	A	410	420	anti-parallel
Strand 4	A	423	437	anti-parallel
Strand 5	A	440	448	anti-parallel
Strand 6	A	381	386	anti-parallel
Strand 7	A	333	345	anti-parallel
Strand 8	A	348	361	anti-parallel
Strand 9	A	364	369	anti-parallel
Strand 10	A	461	466	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	310	311	first strand
Strand 2	C	323	326	parallel
Strand 3	C	315	318	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	372	375	first strand
Strand 2	B	455	458	anti-parallel
Strand 3	B	410	420	anti-parallel
Strand 4	B	423	437	anti-parallel
Strand 5	B	440	448	anti-parallel
Strand 6	B	381	386	anti-parallel
Strand 7	B	333	345	anti-parallel
Strand 8	B	348	361	anti-parallel
Strand 9	B	364	369	anti-parallel
Strand 10	B	461	466	anti-parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	372	375	first strand
Strand 2	C	455	458	anti-parallel
Strand 3	C	410	420	anti-parallel
Strand 4	C	423	437	anti-parallel
Strand 5	C	440	447	anti-parallel
Strand 6	C	381	386	anti-parallel
Strand 7	C	333	345	anti-parallel
Strand 8	C	348	361	anti-parallel
Strand 9	C	364	369	anti-parallel
Strand 10	C	461	466	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	74	79	anti-parallel
Strand 4	D	67	70	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	106	110	parallel
Strand 3	D	89	94	anti-parallel
Strand 4	D	37	42	anti-parallel
Strand 5	D	48	53	anti-parallel
Strand 6	D	57	58	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	31	first strand
Strand 2	D	34	35	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	117	120	first strand
Strand 2	D	132	142	anti-parallel
Strand 3	D	176	185	anti-parallel
Strand 4	D	162	166	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	156	157	first strand
Strand 2	D	150	153	anti-parallel
Strand 3	D	195	199	anti-parallel
Strand 4	D	208	212	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	18	24	anti-parallel
Strand 3	E	77	82	anti-parallel
Strand 4	E	67	72	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	117	121	parallel
Strand 3	E	91	99	anti-parallel
Strand 4	E	32	39	anti-parallel
Strand 5	E	46	51	anti-parallel
Strand 6	E	57	59	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	130	134	first strand
Strand 2	E	146	155	anti-parallel
Strand 3	E	184	193	anti-parallel
Strand 4	E	173	181	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	161	164	first strand
Strand 2	E	204	209	anti-parallel
Strand 3	E	214	219	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	74	79	anti-parallel
Strand 4	F	68	70	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	106	110	parallel
Strand 3	F	89	94	anti-parallel
Strand 4	F	37	42	anti-parallel
Strand 5	F	48	53	anti-parallel
Strand 6	F	57	58	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	31	first strand
Strand 2	F	34	35	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	117	121	first strand
Strand 2	F	132	142	anti-parallel
Strand 3	F	176	185	anti-parallel
Strand 4	F	162	166	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	148	150	first strand
Strand 2	F	198	200	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	7	first strand
Strand 2	G	19	25	anti-parallel
Strand 3	G	74	79	anti-parallel
Strand 4	G	66	70	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	13	first strand
Strand 2	G	106	110	parallel
Strand 3	G	89	94	anti-parallel
Strand 4	G	37	42	anti-parallel
Strand 5	G	48	53	anti-parallel
Strand 6	G	57	58	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	30	31	first strand
Strand 2	G	34	35	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	117	121	first strand
Strand 2	G	132	142	anti-parallel
Strand 3	G	176	185	anti-parallel
Strand 4	G	162	167	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	148	149	first strand
Strand 2	G	199	200	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	18	24	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	56	59	first strand
Strand 2	H	45	52	anti-parallel
Strand 3	H	32	39	anti-parallel
Strand 4	H	92	99	anti-parallel
Strand 5	H	112	118	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	131	133	first strand
Strand 2	H	150	153	anti-parallel
Strand 3	H	184	190	anti-parallel
Strand 4	H	174	176	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	131	133	first strand
Strand 2	H	150	153	anti-parallel
Strand 3	H	184	190	anti-parallel
Strand 4	H	180	181	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	161	164	first strand
Strand 2	H	205	208	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	19	25	anti-parallel
Strand 3	N	77	82	anti-parallel
Strand 4	N	67	72	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	57	59	first strand
Strand 2	N	44	51	anti-parallel
Strand 3	N	32	40	anti-parallel
Strand 4	N	91	99	anti-parallel
Strand 5	N	112	113	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	57	59	first strand
Strand 2	N	44	51	anti-parallel
Strand 3	N	32	40	anti-parallel
Strand 4	N	91	99	anti-parallel
Strand 5	N	117	119	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	145	153	first strand
Strand 2	N	184	194	anti-parallel
Strand 3	N	173	175	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	145	153	first strand
Strand 2	N	184	194	anti-parallel
Strand 3	N	179	181	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	161	164	first strand
Strand 2	N	205	208	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MHS

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MHS