Analysis of interatomic Contacts of Structural Units in PDB entry:
5MI3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MI3 entry

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 5MI3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 9	ARG 382
A	VAL 384	GLY 394
B	THR 9	ARG 382
B	VAL 384	GLY 394

There are 21 helices in PDB entry 5MI3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	41	Right-handed alpha
Helix 2	AA2	A	46	52	Right-handed alpha
Helix 3	AA3	A	84	95	Right-handed alpha
Helix 4	AA4	A	113	127	Right-handed alpha
Helix 5	AA5	A	137	141	Right-handed 310
Helix 6	AA6	A	143	161	Right-handed alpha
Helix 7	AA7	A	164	168	Right-handed 310
Helix 8	AA8	A	174	181	Right-handed alpha
Helix 9	AA9	A	182	200	Right-handed alpha
Helix 10	AB1	A	205	209	Right-handed 310
Helix 11	AB2	A	283	287	Right-handed 310
Helix 12	AB3	B	24	41	Right-handed alpha
Helix 13	AB4	B	46	52	Right-handed alpha
Helix 14	AB5	B	84	95	Right-handed alpha
Helix 15	AB6	B	113	127	Right-handed alpha
Helix 16	AB7	B	137	141	Right-handed 310
Helix 17	AB8	B	143	161	Right-handed alpha
Helix 18	AB9	B	174	180	Right-handed alpha
Helix 19	AC1	B	182	200	Right-handed alpha
Helix 20	AC2	B	205	209	Right-handed 310
Helix 21	AC3	B	283	287	Right-handed 310

There are 12 sheets in PDB entry 5MI3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	71	first strand
Strand 2	A	76	81	anti-parallel
Strand 3	A	12	18	parallel
Strand 4	A	102	107	parallel
Strand 5	A	131	136	parallel
Strand 6	A	170	172	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	58	first strand
Strand 2	A	61	64	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	214	first strand
Strand 2	A	292	294	anti-parallel
Strand 3	A	242	246	anti-parallel
Strand 4	A	252	261	anti-parallel
Strand 5	A	274	280	anti-parallel
Strand 6	A	225	231	anti-parallel
Strand 7	A	217	221	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	214	first strand
Strand 2	A	292	294	anti-parallel
Strand 3	A	242	246	anti-parallel
Strand 4	A	252	261	anti-parallel
Strand 5	A	264	266	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	238	first strand
Strand 2	A	268	270	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	311	first strand
Strand 2	A	356	369	anti-parallel
Strand 3	A	336	343	anti-parallel
Strand 4	A	330	333	anti-parallel
Strand 5	A	374	379	anti-parallel
Strand 6	A	382	394	anti-parallel
Strand 7	A	300	311	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	71	first strand
Strand 2	B	76	81	anti-parallel
Strand 3	B	12	18	parallel
Strand 4	B	102	107	parallel
Strand 5	B	131	136	parallel
Strand 6	B	170	172	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	58	first strand
Strand 2	B	61	64	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	214	first strand
Strand 2	B	292	294	anti-parallel
Strand 3	B	242	246	anti-parallel
Strand 4	B	252	261	anti-parallel
Strand 5	B	274	279	anti-parallel
Strand 6	B	225	231	anti-parallel
Strand 7	B	217	221	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	214	first strand
Strand 2	B	292	294	anti-parallel
Strand 3	B	242	246	anti-parallel
Strand 4	B	252	261	anti-parallel
Strand 5	B	264	266	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	238	first strand
Strand 2	B	268	270	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	300	311	first strand
Strand 2	B	356	369	anti-parallel
Strand 3	B	337	343	anti-parallel
Strand 4	B	330	332	anti-parallel
Strand 5	B	374	379	anti-parallel
Strand 6	B	382	394	anti-parallel
Strand 7	B	300	311	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MI3

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MI3