Analysis of interatomic Contacts of Structural Units in PDB entry:
5MI4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MI4 entry

There is 1 chain in PDB entry 5MI4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4LYS 716
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5MI4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 45Right-handed alpha
Helix 2
AA2
A
64 74Right-handed 310
Helix 3
AA3
A
96 111Right-handed alpha
Helix 4
AA4
A
142 156Right-handed alpha
Helix 5
AA5
A
181 198Right-handed alpha
Helix 6
AA6
A
215 232Right-handed alpha
Helix 7
AA7
A
246 249Right-handed 310
Helix 8
AA8
A
250 265Right-handed alpha
Helix 9
AA9
A
283 287Right-handed 310
Helix 10
AB1
A
292 301Right-handed alpha
Helix 11
AB2
A
319 331Right-handed alpha
Helix 12
AB3
A
362 364Right-handed 310
Helix 13
AB4
A
380 393Right-handed alpha
Helix 14
AB5
A
394 397Right-handed 310
Helix 15
AB6
A
398 411Right-handed alpha
Helix 16
AB7
A
414 424Right-handed alpha
Helix 17
AB8
A
443 456Right-handed alpha
Helix 18
AB9
A
461 484Right-handed alpha
Helix 19
AC1
A
488 517Right-handed alpha
Helix 20
AC2
A
520 545Right-handed alpha
Helix 21
AC3
A
560 581Right-handed alpha
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There are 4 sheets in PDB entry 5MI4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 20first strand
Strand 2
A
115 123anti-parallel
Strand 3
A
81 85anti-parallel
Strand 4
A
89 94anti-parallel
Strand 5
A
55 61parallel
Strand 6
A
24 28parallel
Strand 7
A
49 50parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 134first strand
Strand 2
A
160 163parallel
Strand 3
A
201 206parallel
Strand 4
A
236 240parallel
Strand 5
A
275 278parallel
Strand 6
A
306 309parallel
Strand 7
A
334 338parallel
Strand 8
A
366 371parallel
Strand 9
A
129 134parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
594 597first strand
Strand 2
A
630 647anti-parallel
Strand 3
A
688 695anti-parallel
Strand 4
A
660 662anti-parallel
Strand 5
A
669 670anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
607 610first strand
Strand 2
A
613 616anti-parallel
Strand 3
A
708 713anti-parallel
Strand 4
A
630 647anti-parallel
Strand 5
A
679 683anti-parallel
Strand 6
A
674 676anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il