Analysis of interatomic Contacts of Structural Units in PDB entry:
5MIF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MIF entry

There are 4 chains in PDB entry 5MIF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 34HIS 347
B
 GLN 34HIS 347
C
 GLN 34HIS 347
D
 GLN 34HIS 347
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 5MIF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 48Right-handed alpha
Helix 2
AA2
A
128 140Right-handed alpha
Helix 3
AA3
A
157 174Right-handed alpha
Helix 4
AA4
A
175 177Right-handed 310
Helix 5
AA5
A
190 207Right-handed alpha
Helix 6
AA6
A
227 233Right-handed alpha
Helix 7
AA7
A
240 252Right-handed alpha
Helix 8
AA8
A
254 260Right-handed 310
Helix 9
AA9
A
264 268Right-handed 310
Helix 10
AB1
A
269 274Right-handed alpha
Helix 11
AB2
A
289 303Right-handed alpha
Helix 12
AB3
A
322 327Right-handed alpha
Helix 13
AB4
A
328 346Right-handed alpha
Helix 14
AB5
B
36 47Right-handed alpha
Helix 15
AB6
B
128 140Right-handed alpha
Helix 16
AB7
B
157 174Right-handed alpha
Helix 17
AB8
B
175 177Right-handed 310
Helix 18
AB9
B
190 206Right-handed alpha
Helix 19
AC1
B
227 233Right-handed alpha
Helix 20
AC2
B
240 252Right-handed alpha
Helix 21
AC3
B
254 260Right-handed 310
Helix 22
AC4
B
264 268Right-handed 310
Helix 23
AC5
B
269 274Right-handed alpha
Helix 24
AC6
B
289 302Right-handed alpha
Helix 25
AC7
B
322 327Right-handed alpha
Helix 26
AC8
B
328 346Right-handed alpha
Helix 27
AC9
C
36 47Right-handed alpha
Helix 28
AD1
C
128 140Right-handed alpha
Helix 29
AD2
C
157 174Right-handed alpha
Helix 30
AD3
C
175 177Right-handed 310
Helix 31
AD4
C
190 206Right-handed alpha
Helix 32
AD5
C
227 233Right-handed alpha
Helix 33
AD6
C
240 252Right-handed alpha
Helix 34
AD7
C
256 260Right-handed 310
Helix 35
AD8
C
264 268Right-handed 310
Helix 36
AD9
C
269 274Right-handed alpha
Helix 37
AE1
C
289 303Right-handed alpha
Helix 38
AE2
C
324 327Right-handed 310
Helix 39
AE3
C
328 346Right-handed alpha
Helix 40
AE4
D
36 46Right-handed alpha
Helix 41
AE5
D
128 140Right-handed alpha
Helix 42
AE6
D
157 174Right-handed alpha
Helix 43
AE7
D
175 177Right-handed 310
Helix 44
AE8
D
190 207Right-handed alpha
Helix 45
AE9
D
227 233Right-handed alpha
Helix 46
AF1
D
240 252Right-handed alpha
Helix 47
AF2
D
254 260Right-handed 310
Helix 48
AF3
D
264 268Right-handed 310
Helix 49
AF4
D
269 274Right-handed alpha
Helix 50
AF5
D
289 303Right-handed alpha
Helix 51
AF6
D
322 327Right-handed alpha
Helix 52
AF7
D
328 346Right-handed alpha
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There are 2 sheets in PDB entry 5MIF. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 16 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 82first strand
Strand 2
A
90 97anti-parallel
Strand 3
A
142 147anti-parallel
Strand 4
A
109 115parallel
Strand 5
A
179 189parallel
Strand 6
A
213 217parallel
Strand 7
A
279 286parallel
Strand 8
A
307 316parallel
Strand 9
C
307 316anti-parallel
Strand 10
C
278 286parallel
Strand 11
C
213 217parallel
Strand 12
C
179 189parallel
Strand 13
C
109 115parallel
Strand 14
C
142 147parallel
Strand 15
C
90 97anti-parallel
Strand 16
C
75 82anti-parallel
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There are 16 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 82first strand
Strand 2
B
90 97anti-parallel
Strand 3
B
142 147anti-parallel
Strand 4
B
109 115parallel
Strand 5
B
179 189parallel
Strand 6
B
213 217parallel
Strand 7
B
278 286parallel
Strand 8
B
307 316parallel
Strand 9
D
307 316anti-parallel
Strand 10
D
279 286parallel
Strand 11
D
213 217parallel
Strand 12
D
179 189parallel
Strand 13
D
109 115parallel
Strand 14
D
142 147parallel
Strand 15
D
90 97anti-parallel
Strand 16
D
75 82anti-parallel
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