Analysis of interatomic Contacts of Structural Units in PDB entry:
5MIN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MIN entry

There are 2 chains in PDB entry 5MIN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 1	LYS 452
B	ASP 1	ALA 453

There are 14 helices in PDB entry 5MIN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	11	Right-handed alpha
Helix 2	AA2	A	168	172	Right-handed 310
Helix 3	AA3	A	183	189	Right-handed alpha
Helix 4	AA4	A	282	285	Right-handed 310
Helix 5	AA5	A	308	312	Right-handed 310
Helix 6	AA6	A	335	339	Right-handed 310
Helix 7	AA7	A	341	346	Right-handed 310
Helix 8	AA8	B	5	12	Right-handed alpha
Helix 9	AA9	B	168	172	Right-handed 310
Helix 10	AB1	B	183	189	Right-handed alpha
Helix 11	AB2	B	282	285	Right-handed 310
Helix 12	AB3	B	308	312	Right-handed 310
Helix 13	AB4	B	335	339	Right-handed 310
Helix 14	AB5	B	341	346	Right-handed 310

There are 17 sheets in PDB entry 5MIN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	23	first strand
Strand 2	A	446	451	anti-parallel
Strand 3	A	418	423	anti-parallel
Strand 4	A	407	412	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	34	first strand
Strand 2	A	40	44	anti-parallel
Strand 3	A	49	53	anti-parallel
Strand 4	A	60	65	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	84	first strand
Strand 2	A	93	101	anti-parallel
Strand 3	A	112	122	anti-parallel
Strand 4	A	127	138	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	151	first strand
Strand 2	A	157	161	anti-parallel
Strand 3	A	198	202	anti-parallel
Strand 4	A	222	225	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	229	235	first strand
Strand 2	A	241	246	anti-parallel
Strand 3	A	252	257	anti-parallel
Strand 4	A	322	324	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	280	first strand
Strand 2	A	306	307	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	355	356	first strand
Strand 2	A	370	374	anti-parallel
Strand 3	A	381	386	anti-parallel
Strand 4	A	393	400	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	429	430	first strand
Strand 2	A	436	437	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	23	first strand
Strand 2	B	446	451	anti-parallel
Strand 3	B	418	423	anti-parallel
Strand 4	B	407	412	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	34	first strand
Strand 2	B	40	44	anti-parallel
Strand 3	B	49	53	anti-parallel
Strand 4	B	60	65	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	84	first strand
Strand 2	B	93	101	anti-parallel
Strand 3	B	112	122	anti-parallel
Strand 4	B	127	138	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	157	161	anti-parallel
Strand 3	B	198	202	anti-parallel
Strand 4	B	222	225	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	214	215	first strand
Strand 2	B	218	219	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	235	first strand
Strand 2	B	241	246	anti-parallel
Strand 3	B	252	257	anti-parallel
Strand 4	B	322	324	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	280	first strand
Strand 2	B	306	307	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	355	356	first strand
Strand 2	B	370	374	anti-parallel
Strand 3	B	381	386	anti-parallel
Strand 4	B	393	400	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	429	430	first strand
Strand 2	B	436	437	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MIN

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MIN