Analysis of interatomic Contacts of Structural Units in PDB entry:
5MIO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MIO entry

There are 3 chains in PDB entry 5MIO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 437
B
 MET 1ALA 438
C
 PHE 227VAL 705
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 5MIO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 29Right-handed alpha
Helix 2
AA2
A
47 51Right-handed 310
Helix 3
AA3
A
72 80Right-handed alpha
Helix 4
AA4
A
88 90Right-handed 310
Helix 5
AA5
A
102 108Right-handed alpha
Helix 6
AA6
A
110 127Right-handed alpha
Helix 7
AA7
A
143 161Right-handed alpha
Helix 8
AA8
A
182 195Right-handed alpha
Helix 9
AA9
A
196 198Right-handed 310
Helix 10
AB1
A
206 216Right-handed alpha
Helix 11
AB2
A
223 244Right-handed alpha
Helix 12
AB3
A
251 260Right-handed alpha
Helix 13
AB4
A
287 294Right-handed alpha
Helix 14
AB5
A
295 301Right-handed 310
Helix 15
AB6
A
306 310Right-handed 310
Helix 16
AB7
A
324 337Right-handed alpha
Helix 17
AB8
A
384 400Right-handed alpha
Helix 18
AB9
A
404 410Right-handed alpha
Helix 19
AC1
A
414 436Right-handed alpha
Helix 20
AC2
B
10 28Right-handed alpha
Helix 21
AC3
B
40 46Right-handed 310
Helix 22
AC4
B
48 51Right-handed 310
Helix 23
AC5
B
72 80Right-handed alpha
Helix 24
AC6
B
83 87Right-handed 310
Helix 25
AC7
B
88 90Right-handed 310
Helix 26
AC8
B
102 108Right-handed alpha
Helix 27
AC9
B
109 128Right-handed alpha
Helix 28
AD1
B
144 161Right-handed alpha
Helix 29
AD2
B
174 178Right-handed 310
Helix 30
AD3
B
182 198Right-handed alpha
Helix 31
AD4
B
206 216Right-handed alpha
Helix 32
AD5
B
223 239Right-handed alpha
Helix 33
AD6
B
239 244Right-handed alpha
Helix 34
AD7
B
251 260Right-handed alpha
Helix 35
AD8
B
287 297Right-handed alpha
Helix 36
AD9
B
298 301Right-handed 310
Helix 37
AE1
B
324 339Right-handed alpha
Helix 38
AE2
B
340 343Right-handed 310
Helix 39
AE3
B
384 400Right-handed alpha
Helix 40
AE4
B
405 410Right-handed alpha
Helix 41
AE5
B
414 437Right-handed alpha
Helix 42
AE6
C
229 243Right-handed alpha
Helix 43
AE7
C
269 275Right-handed alpha
Helix 44
AE8
C
320 328Right-handed alpha
Helix 45
AE9
C
329 331Right-handed 310
Helix 46
AF1
C
332 338Right-handed alpha
Helix 47
AF2
C
353 360Right-handed alpha
Helix 48
AF3
C
372 386Right-handed alpha
Helix 49
AF4
C
387 392Right-handed alpha
Helix 50
AF5
C
441 456Right-handed alpha
Helix 51
AF6
C
507 533Right-handed alpha
Helix 52
AF7
C
542 548Right-handed alpha
Helix 53
AF8
C
548 553Right-handed alpha
Helix 54
AF9
C
568 570Right-handed 310
Helix 55
AG1
C
571 584Right-handed alpha
Helix 56
AG2
C
623 634Right-handed alpha
Helix 57
AG3
C
635 644Right-handed alpha
Helix 58
AG4
C
658 666Right-handed alpha
Helix 59
AG5
C
668 678Right-handed alpha
Helix 60
AG6
C
691 700Right-handed alpha
Helix 61
AG7
C
701 711Right-handed alpha
Helix 62
AG8
C
724 732Right-handed alpha
Helix 63
AG9
C
734 744Right-handed alpha
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There are 10 sheets in PDB entry 5MIO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
65 69parallel
Strand 3
A
4 9parallel
Strand 4
A
134 140parallel
Strand 5
A
165 172parallel
Strand 6
A
200 205parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
61 63anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 273first strand
Strand 2
A
373 381anti-parallel
Strand 3
A
312 321anti-parallel
Strand 4
A
352 356parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 94first strand
Strand 2
B
65 69parallel
Strand 3
B
3 9parallel
Strand 4
B
132 140parallel
Strand 5
B
165 172parallel
Strand 6
B
200 205parallel
Strand 7
B
267 273parallel
Strand 8
B
373 381anti-parallel
Strand 9
B
312 321anti-parallel
Strand 10
B
351 356parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 55first strand
Strand 2
B
61 63anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
313 315first strand
Strand 2
C
260 265parallel
Strand 3
C
558 565parallel
Strand 4
C
341 347parallel
Strand 5
C
483 492parallel
Strand 6
C
471 480anti-parallel
Strand 7
C
395 405anti-parallel
Strand 8
C
408 411anti-parallel
Strand 9
C
417 418anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
313 315first strand
Strand 2
C
260 265parallel
Strand 3
C
558 565parallel
Strand 4
C
341 347parallel
Strand 5
C
483 492parallel
Strand 6
C
471 480anti-parallel
Strand 7
C
395 405anti-parallel
Strand 8
C
437 439anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
281 282first strand
Strand 2
C
288 296anti-parallel
Strand 3
C
302 310anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
420 423first strand
Strand 2
C
429 432anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
458 459first strand
Strand 2
C
467 468anti-parallel
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