Analysis of interatomic Contacts of Structural Units in PDB entry:
5MIU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MIU entry

There are 2 chains in PDB entry 5MIU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 129	HIS 610
B	PRO 128	HIS 610

There are 28 helices in PDB entry 5MIU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	139	153	Right-handed alpha
Helix 2	AA2	A	171	176	Right-handed 310
Helix 3	AA3	A	185	190	Right-handed alpha
Helix 4	AA4	A	266	272	Right-handed alpha
Helix 5	AA5	A	273	278	Right-handed alpha
Helix 6	AA6	A	285	299	Right-handed alpha
Helix 7	AA7	A	308	326	Right-handed alpha
Helix 8	AA8	A	344	358	Right-handed alpha
Helix 9	AA9	A	405	410	Right-handed alpha
Helix 10	AB1	A	453	469	Right-handed alpha
Helix 11	AB2	A	515	523	Right-handed alpha
Helix 12	AB3	A	583	594	Right-handed alpha
Helix 13	AB4	A	599	605	Right-handed alpha
Helix 14	AB5	A	606	608	Right-handed 310
Helix 15	AB6	B	139	153	Right-handed alpha
Helix 16	AB7	B	171	181	Right-handed 310
Helix 17	AB8	B	185	190	Right-handed alpha
Helix 18	AB9	B	266	272	Right-handed alpha
Helix 19	AC1	B	273	278	Right-handed alpha
Helix 20	AC2	B	285	299	Right-handed alpha
Helix 21	AC3	B	308	326	Right-handed alpha
Helix 22	AC4	B	344	358	Right-handed alpha
Helix 23	AC5	B	405	410	Right-handed alpha
Helix 24	AC6	B	453	469	Right-handed alpha
Helix 25	AC7	B	515	521	Right-handed alpha
Helix 26	AC8	B	583	594	Right-handed alpha
Helix 27	AC9	B	599	605	Right-handed alpha
Helix 28	AD1	B	606	608	Right-handed 310

There are 16 sheets in PDB entry 5MIU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	227	first strand
Strand 2	A	158	161	parallel
Strand 3	A	130	136	parallel
Strand 4	A	249	257	parallel
Strand 5	A	241	244	anti-parallel
Strand 6	A	232	236	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	227	first strand
Strand 2	A	158	161	parallel
Strand 3	A	130	136	parallel
Strand 4	A	249	257	parallel
Strand 5	A	432	434	parallel
Strand 6	A	427	429	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	193	first strand
Strand 2	A	199	201	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	263	first strand
Strand 2	A	399	401	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	281	first strand
Strand 2	A	392	395	parallel
Strand 3	A	301	305	parallel
Strand 4	A	328	332	parallel
Strand 5	A	361	363	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	368	373	first strand
Strand 2	A	378	382	anti-parallel
Strand 3	A	387	390	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	420	421	first strand
Strand 2	A	439	443	parallel
Strand 3	A	447	450	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	480	484	first strand
Strand 2	A	490	495	anti-parallel
Strand 3	A	572	578	anti-parallel
Strand 4	A	561	567	anti-parallel
Strand 5	A	503	508	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	227	first strand
Strand 2	B	157	161	parallel
Strand 3	B	130	136	parallel
Strand 4	B	249	257	parallel
Strand 5	B	241	244	anti-parallel
Strand 6	B	232	236	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	227	first strand
Strand 2	B	157	161	parallel
Strand 3	B	130	136	parallel
Strand 4	B	249	257	parallel
Strand 5	B	432	434	parallel
Strand 6	B	427	429	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	193	first strand
Strand 2	B	199	201	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	261	263	first strand
Strand 2	B	399	401	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	281	first strand
Strand 2	B	392	395	parallel
Strand 3	B	301	305	parallel
Strand 4	B	328	332	parallel
Strand 5	B	361	363	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	368	373	first strand
Strand 2	B	378	382	anti-parallel
Strand 3	B	387	390	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	420	421	first strand
Strand 2	B	439	443	parallel
Strand 3	B	447	449	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	480	484	first strand
Strand 2	B	490	495	anti-parallel
Strand 3	B	572	578	anti-parallel
Strand 4	B	561	567	anti-parallel
Strand 5	B	503	508	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MIU

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MIU