Analysis of interatomic Contacts of Structural Units in PDB entry:
5MIV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MIV entry

There are 2 chains in PDB entry 5MIV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 128	GLU 611
C	PRO 128	GLU 611

There are 25 helices in PDB entry 5MIV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	139	153	Right-handed alpha
Helix 2	AA2	A	171	176	Right-handed alpha
Helix 3	AA3	A	176	181	Right-handed alpha
Helix 4	AA4	A	185	190	Right-handed alpha
Helix 5	AA5	A	266	272	Right-handed alpha
Helix 6	AA6	A	273	278	Right-handed alpha
Helix 7	AA7	A	285	297	Right-handed alpha
Helix 8	AA8	A	308	326	Right-handed alpha
Helix 9	AA9	A	344	360	Right-handed alpha
Helix 10	AB1	A	404	410	Right-handed alpha
Helix 11	AB2	A	453	469	Right-handed alpha
Helix 12	AB3	A	583	594	Right-handed alpha
Helix 13	AB4	A	599	605	Right-handed alpha
Helix 14	AB5	C	139	153	Right-handed alpha
Helix 15	AB6	C	171	176	Right-handed alpha
Helix 16	AB7	C	185	190	Right-handed alpha
Helix 17	AB8	C	266	272	Right-handed alpha
Helix 18	AB9	C	273	278	Right-handed alpha
Helix 19	AC1	C	285	297	Right-handed alpha
Helix 20	AC2	C	308	326	Right-handed alpha
Helix 21	AC3	C	344	360	Right-handed alpha
Helix 22	AC4	C	404	410	Right-handed alpha
Helix 23	AC5	C	453	469	Right-handed alpha
Helix 24	AC6	C	583	594	Right-handed alpha
Helix 25	AC7	C	599	605	Right-handed alpha

There are 16 sheets in PDB entry 5MIV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	225	first strand
Strand 2	A	157	161	parallel
Strand 3	A	130	136	parallel
Strand 4	A	249	257	parallel
Strand 5	A	241	244	anti-parallel
Strand 6	A	232	236	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	225	first strand
Strand 2	A	157	161	parallel
Strand 3	A	130	136	parallel
Strand 4	A	249	257	parallel
Strand 5	A	432	434	parallel
Strand 6	A	427	429	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	193	first strand
Strand 2	A	199	201	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	263	first strand
Strand 2	A	399	401	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	282	first strand
Strand 2	A	392	395	parallel
Strand 3	A	301	305	parallel
Strand 4	A	328	332	parallel
Strand 5	A	361	363	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	368	373	first strand
Strand 2	A	378	382	anti-parallel
Strand 3	A	387	390	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	420	421	first strand
Strand 2	A	439	443	parallel
Strand 3	A	447	450	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	480	484	first strand
Strand 2	A	490	495	anti-parallel
Strand 3	A	571	578	anti-parallel
Strand 4	A	562	568	anti-parallel
Strand 5	A	503	507	anti-parallel
Strand 6	A	540	542	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	223	225	first strand
Strand 2	C	157	161	parallel
Strand 3	C	129	136	parallel
Strand 4	C	249	257	parallel
Strand 5	C	241	244	anti-parallel
Strand 6	C	232	236	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	223	225	first strand
Strand 2	C	157	161	parallel
Strand 3	C	129	136	parallel
Strand 4	C	249	257	parallel
Strand 5	C	432	434	parallel
Strand 6	C	427	429	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	192	first strand
Strand 2	C	200	201	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	261	263	first strand
Strand 2	C	399	401	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	280	281	first strand
Strand 2	C	392	395	parallel
Strand 3	C	301	305	parallel
Strand 4	C	328	333	parallel
Strand 5	C	361	364	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	368	373	first strand
Strand 2	C	378	382	anti-parallel
Strand 3	C	387	390	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	420	421	first strand
Strand 2	C	439	443	parallel
Strand 3	C	447	450	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	480	484	first strand
Strand 2	C	490	495	anti-parallel
Strand 3	C	571	578	anti-parallel
Strand 4	C	562	568	anti-parallel
Strand 5	C	503	507	anti-parallel
Strand 6	C	541	542	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MIV

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MIV