Analysis of interatomic Contacts of Structural Units in PDB entry:
5MJ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MJ4 entry

There are 3 chains in PDB entry 5MJ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 23SER 328
B
 SER 27SER 188
C
 MET 2THR 118
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5MJ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
81 85Right-handed 310
Helix 2
AA2
A
228 233Right-handed alpha
Helix 3
AA3
B
29 47Right-handed alpha
Helix 4
AA4
B
60 65Right-handed alpha
Helix 5
AA5
B
66 68Right-handed 310
Helix 6
AA6
B
78 86Right-handed alpha
Helix 7
AA7
B
86 105Right-handed alpha
Helix 8
AA8
B
106 111Right-handed alpha
Helix 9
AA9
B
119 136Right-handed alpha
Helix 10
AB1
B
154 187Right-handed alpha
Helix 11
AB2
C
3 27Right-handed alpha
Helix 12
AB3
C
48 70Right-handed alpha
Helix 13
AB4
C
92 117Right-handed alpha
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There are 7 sheets in PDB entry 5MJ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 27first strand
Strand 2
A
30 36anti-parallel
Strand 3
A
95 108parallel
Strand 4
A
86 92anti-parallel
Strand 5
A
58 62anti-parallel
Strand 6
A
70 71anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 27first strand
Strand 2
A
30 36anti-parallel
Strand 3
A
95 108parallel
Strand 4
A
111 112anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 49first strand
Strand 2
A
74 79anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 132first strand
Strand 2
A
139 146anti-parallel
Strand 3
A
187 195anti-parallel
Strand 4
A
174 177anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 132first strand
Strand 2
A
139 146anti-parallel
Strand 3
A
187 195anti-parallel
Strand 4
A
166 170anti-parallel
Strand 5
A
152 160anti-parallel
Strand 6
A
208 216anti-parallel
Strand 7
A
219 227anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 244first strand
Strand 2
A
253 257anti-parallel
Strand 3
A
295 297anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 291first strand
Strand 2
A
271 277anti-parallel
Strand 3
A
306 312anti-parallel
Strand 4
A
323 325anti-parallel
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