Analysis of interatomic Contacts of Structural Units in PDB entry:
5MJB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MJB entry

There are 6 chains in PDB entry 5MJB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 608ILE 646
A
 VAL 648THR 777
A
 THR 779VAL 891
B
 ARG 608ILE 646
B
 VAL 648THR 777
B
 THR 779THR 890
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5MJB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
615 617Right-handed 310
Helix 2
AA2
A
658 673Right-handed alpha
Helix 3
AA3
A
704 711Right-handed alpha
Helix 4
AA4
A
717 738Right-handed alpha
Helix 5
AA5
A
746 748Right-handed 310
Helix 6
AA6
A
787 791Right-handed 310
Helix 7
AA7
A
792 799Right-handed alpha
Helix 8
AA8
A
802 819Right-handed alpha
Helix 9
AA9
A
829 839Right-handed alpha
Helix 10
AB1
A
850 861Right-handed alpha
Helix 11
AB2
A
864 868Right-handed 310
Helix 12
AB3
A
870 884Right-handed alpha
Helix 13
AB4
A
885 889Right-handed 310
Helix 14
AB5
B
615 617Right-handed 310
Helix 15
AB6
B
658 673Right-handed alpha
Helix 16
AB7
B
704 711Right-handed alpha
Helix 17
AB8
B
717 738Right-handed alpha
Helix 18
AB9
B
746 748Right-handed 310
Helix 19
AC1
B
787 791Right-handed 310
Helix 20
AC2
B
792 799Right-handed alpha
Helix 21
AC3
B
802 819Right-handed alpha
Helix 22
AC4
B
829 839Right-handed alpha
Helix 23
AC5
B
850 861Right-handed alpha
Helix 24
AC6
B
864 868Right-handed 310
Helix 25
AC7
B
870 884Right-handed alpha
Helix 26
AC8
B
885 889Right-handed 310
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There are 8 sheets in PDB entry 5MJB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
619 627first strand
Strand 2
A
632 638anti-parallel
Strand 3
A
646 652anti-parallel
Strand 4
A
694 698anti-parallel
Strand 5
A
683 687anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
740 741first strand
Strand 2
A
767 768anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
750 752first strand
Strand 2
A
758 760anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
778 779first strand
Strand 2
A
800 801anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
619 627first strand
Strand 2
B
632 638anti-parallel
Strand 3
B
646 652anti-parallel
Strand 4
B
694 698anti-parallel
Strand 5
B
683 687anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
740 741first strand
Strand 2
B
767 768anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
750 752first strand
Strand 2
B
758 760anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
778 779first strand
Strand 2
B
800 801anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il