Analysis of interatomic Contacts of Structural Units in PDB entry:
5MJK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MJK entry

There are 4 chains in PDB entry 5MJK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 5	GLU 306
B	LYS 5	GLU 306
C	LYS 5	GLU 306
D	LYS 5	GLU 306

There are 40 helices in PDB entry 5MJK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	27	Right-handed alpha
Helix 2	AA2	A	40	46	Right-handed 310
Helix 3	AA3	A	60	69	Right-handed alpha
Helix 4	AA4	A	134	139	Right-handed alpha
Helix 5	AA5	A	140	143	Right-handed 310
Helix 6	AA6	A	153	164	Right-handed alpha
Helix 7	AA7	A	182	192	Right-handed alpha
Helix 8	AA8	A	244	248	Right-handed 310
Helix 9	AA9	A	276	279	Right-handed 310
Helix 10	AB1	A	285	306	Right-handed alpha
Helix 11	AB2	B	14	27	Right-handed alpha
Helix 12	AB3	B	40	46	Right-handed 310
Helix 13	AB4	B	60	69	Right-handed alpha
Helix 14	AB5	B	134	139	Right-handed alpha
Helix 15	AB6	B	140	143	Right-handed 310
Helix 16	AB7	B	153	164	Right-handed alpha
Helix 17	AB8	B	182	192	Right-handed alpha
Helix 18	AB9	B	244	248	Right-handed 310
Helix 19	AC1	B	276	279	Right-handed 310
Helix 20	AC2	B	285	306	Right-handed alpha
Helix 21	AC3	C	14	27	Right-handed alpha
Helix 22	AC4	C	40	46	Right-handed 310
Helix 23	AC5	C	60	69	Right-handed alpha
Helix 24	AC6	C	134	139	Right-handed alpha
Helix 25	AC7	C	140	143	Right-handed 310
Helix 26	AC8	C	153	164	Right-handed alpha
Helix 27	AC9	C	182	192	Right-handed alpha
Helix 28	AD1	C	244	248	Right-handed 310
Helix 29	AD2	C	276	279	Right-handed 310
Helix 30	AD3	C	285	306	Right-handed alpha
Helix 31	AD4	D	14	27	Right-handed alpha
Helix 32	AD5	D	40	46	Right-handed 310
Helix 33	AD6	D	60	69	Right-handed alpha
Helix 34	AD7	D	134	139	Right-handed alpha
Helix 35	AD8	D	140	143	Right-handed 310
Helix 36	AD9	D	153	164	Right-handed alpha
Helix 37	AE1	D	182	192	Right-handed alpha
Helix 38	AE2	D	244	248	Right-handed 310
Helix 39	AE3	D	276	279	Right-handed 310
Helix 40	AE4	D	285	306	Right-handed alpha

There are 24 sheets in PDB entry 5MJK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	80	first strand
Strand 2	A	31	35	parallel
Strand 3	A	8	11	parallel
Strand 4	A	107	109	parallel
Strand 5	A	272	274	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	49	first strand
Strand 2	A	58	59	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	88	first strand
Strand 2	A	93	97	anti-parallel
Strand 3	A	100	104	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	115	first strand
Strand 2	A	240	242	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	132	first strand
Strand 2	A	233	236	parallel
Strand 3	A	146	150	parallel
Strand 4	A	169	173	parallel
Strand 5	A	195	198	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	208	first strand
Strand 2	A	213	220	anti-parallel
Strand 3	A	226	230	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	80	first strand
Strand 2	B	31	35	parallel
Strand 3	B	6	11	parallel
Strand 4	B	101	109	parallel
Strand 5	B	93	97	anti-parallel
Strand 6	B	83	88	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	80	first strand
Strand 2	B	31	35	parallel
Strand 3	B	6	11	parallel
Strand 4	B	101	109	parallel
Strand 5	B	272	274	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	49	first strand
Strand 2	B	58	59	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	115	first strand
Strand 2	B	240	242	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	132	first strand
Strand 2	B	233	236	parallel
Strand 3	B	146	150	parallel
Strand 4	B	169	173	parallel
Strand 5	B	195	198	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	208	first strand
Strand 2	B	213	220	anti-parallel
Strand 3	B	226	230	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	80	first strand
Strand 2	C	31	35	parallel
Strand 3	C	6	11	parallel
Strand 4	C	101	109	parallel
Strand 5	C	93	97	anti-parallel
Strand 6	C	83	88	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	80	first strand
Strand 2	C	31	35	parallel
Strand 3	C	6	11	parallel
Strand 4	C	101	109	parallel
Strand 5	C	272	274	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	49	first strand
Strand 2	C	58	59	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	115	first strand
Strand 2	C	240	242	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	132	first strand
Strand 2	C	233	236	parallel
Strand 3	C	146	150	parallel
Strand 4	C	169	173	parallel
Strand 5	C	195	198	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	201	208	first strand
Strand 2	C	213	220	anti-parallel
Strand 3	C	226	230	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	80	first strand
Strand 2	D	31	35	parallel
Strand 3	D	6	11	parallel
Strand 4	D	101	109	parallel
Strand 5	D	93	97	anti-parallel
Strand 6	D	83	88	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	80	first strand
Strand 2	D	31	35	parallel
Strand 3	D	6	11	parallel
Strand 4	D	101	109	parallel
Strand 5	D	272	274	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	49	first strand
Strand 2	D	58	59	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	113	115	first strand
Strand 2	D	240	242	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	132	first strand
Strand 2	D	233	236	parallel
Strand 3	D	146	150	parallel
Strand 4	D	169	173	parallel
Strand 5	D	195	198	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	201	208	first strand
Strand 2	D	213	220	anti-parallel
Strand 3	D	226	230	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MJK

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MJK