Analysis of interatomic Contacts of Structural Units in PDB entry:
5MJS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MJS entry

There are 9 chains in PDB entry 5MJS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 428
D	MET 1	GLY 121
E	MET 1	MET 444
F	MET 1	MET 444
G	MET 1	MET 444
H	MET 1	MET 444
J	MET 1	GLY 428
B	MET 1	GLY 428
C	MET 1	GLY 428

There are137 helices in PDB entry 5MJS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	28	Right-handed alpha
Helix 2	AA2	A	72	79	Right-handed alpha
Helix 3	AA3	A	100	106	Right-handed alpha
Helix 4	AA4	A	107	125	Right-handed alpha
Helix 5	AA5	A	142	157	Right-handed alpha
Helix 6	AA6	A	180	193	Right-handed alpha
Helix 7	AA7	A	203	214	Right-handed alpha
Helix 8	AA8	A	221	242	Right-handed alpha
Helix 9	AA9	A	251	256	Right-handed alpha
Helix 10	AB1	A	284	291	Right-handed alpha
Helix 11	AB2	A	322	336	Right-handed alpha
Helix 12	AB3	A	373	386	Right-handed alpha
Helix 13	AB4	A	394	399	Right-handed alpha
Helix 14	AB5	A	403	426	Right-handed alpha
Helix 15	AB6	D	4	17	Right-handed alpha
Helix 16	AB7	D	22	28	Right-handed 310
Helix 17	AB8	D	32	37	Right-handed alpha
Helix 18	AB9	D	44	48	Right-handed 310
Helix 19	AC1	D	54	64	Right-handed alpha
Helix 20	AC2	D	64	73	Right-handed alpha
Helix 21	AC3	D	79	84	Right-handed alpha
Helix 22	AC4	D	91	99	Right-handed alpha
Helix 23	AC5	D	112	117	Right-handed alpha
Helix 24	AC6	E	9	27	Right-handed alpha
Helix 25	AC7	E	51	55	Right-handed 310
Helix 26	AC8	E	79	85	Right-handed alpha
Helix 27	AC9	E	106	111	Right-handed alpha
Helix 28	AD1	E	114	117	Right-handed 310
Helix 29	AD2	E	118	130	Right-handed alpha
Helix 30	AD3	E	148	166	Right-handed alpha
Helix 31	AD4	E	188	193	Right-handed alpha
Helix 32	AD5	E	209	220	Right-handed alpha
Helix 33	AD6	E	227	247	Right-handed alpha
Helix 34	AD7	E	255	262	Right-handed alpha
Helix 35	AD8	E	281	286	Right-handed alpha
Helix 36	AD9	E	291	300	Right-handed alpha
Helix 37	AE1	E	301	305	Right-handed 310
Helix 38	AE2	E	328	340	Right-handed alpha
Helix 39	AE3	E	388	403	Right-handed alpha
Helix 40	AE4	E	409	414	Right-handed alpha
Helix 41	AE5	E	419	441	Right-handed alpha
Helix 42	AE6	F	9	27	Right-handed alpha
Helix 43	AE7	F	51	55	Right-handed 310
Helix 44	AE8	F	79	85	Right-handed alpha
Helix 45	AE9	F	106	111	Right-handed alpha
Helix 46	AF1	F	114	117	Right-handed 310
Helix 47	AF2	F	118	130	Right-handed alpha
Helix 48	AF3	F	148	166	Right-handed alpha
Helix 49	AF4	F	188	193	Right-handed alpha
Helix 50	AF5	F	209	220	Right-handed alpha
Helix 51	AF6	F	227	247	Right-handed alpha
Helix 52	AF7	F	255	262	Right-handed alpha
Helix 53	AF8	F	281	286	Right-handed alpha
Helix 54	AF9	F	291	300	Right-handed alpha
Helix 55	AG1	F	301	305	Right-handed 310
Helix 56	AG2	F	328	340	Right-handed alpha
Helix 57	AG3	F	388	403	Right-handed alpha
Helix 58	AG4	F	409	414	Right-handed alpha
Helix 59	AG5	F	419	441	Right-handed alpha
Helix 60	AG6	G	9	27	Right-handed alpha
Helix 61	AG7	G	51	55	Right-handed 310
Helix 62	AG8	G	79	85	Right-handed alpha
Helix 63	AG9	G	106	111	Right-handed alpha
Helix 64	AH1	G	114	117	Right-handed 310
Helix 65	AH2	G	118	130	Right-handed alpha
Helix 66	AH3	G	148	166	Right-handed alpha
Helix 67	AH4	G	188	193	Right-handed alpha
Helix 68	AH5	G	209	220	Right-handed alpha
Helix 69	AH6	G	227	247	Right-handed alpha
Helix 70	AH7	G	255	262	Right-handed alpha
Helix 71	AH8	G	281	286	Right-handed alpha
Helix 72	AH9	G	291	300	Right-handed alpha
Helix 73	AI1	G	301	305	Right-handed 310
Helix 74	AI2	G	328	340	Right-handed alpha
Helix 75	AI3	G	388	403	Right-handed alpha
Helix 76	AI4	G	409	414	Right-handed alpha
Helix 77	AI5	G	419	441	Right-handed alpha
Helix 78	AI6	H	9	27	Right-handed alpha
Helix 79	AI7	H	51	55	Right-handed 310
Helix 80	AI8	H	79	85	Right-handed alpha
Helix 81	AI9	H	106	111	Right-handed alpha
Helix 82	AJ1	H	114	117	Right-handed 310
Helix 83	AJ2	H	118	130	Right-handed alpha
Helix 84	AJ3	H	148	166	Right-handed alpha
Helix 85	AJ4	H	188	193	Right-handed alpha
Helix 86	AJ5	H	209	220	Right-handed alpha
Helix 87	AJ6	H	227	247	Right-handed alpha
Helix 88	AJ7	H	255	262	Right-handed alpha
Helix 89	AJ8	H	281	286	Right-handed alpha
Helix 90	AJ9	H	291	300	Right-handed alpha
Helix 91	AK1	H	301	305	Right-handed 310
Helix 92	AK2	H	328	340	Right-handed alpha
Helix 93	AK3	H	388	403	Right-handed alpha
Helix 94	AK4	H	409	414	Right-handed alpha
Helix 95	AK5	H	419	441	Right-handed alpha
Helix 96	AK6	J	10	28	Right-handed alpha
Helix 97	AK7	J	72	79	Right-handed alpha
Helix 98	AK8	J	100	106	Right-handed alpha
Helix 99	AK9	J	107	125	Right-handed alpha
Helix 100	AL1	J	142	157	Right-handed alpha
Helix 101	AL2	J	180	193	Right-handed alpha
Helix 102	AL3	J	203	214	Right-handed alpha
Helix 103	AL4	J	221	242	Right-handed alpha
Helix 104	AL5	J	251	256	Right-handed alpha
Helix 105	AL6	J	284	291	Right-handed alpha
Helix 106	AL7	J	322	336	Right-handed alpha
Helix 107	AL8	J	373	386	Right-handed alpha
Helix 108	AL9	J	394	399	Right-handed alpha
Helix 109	AM1	J	403	426	Right-handed alpha
Helix 110	AM2	B	10	28	Right-handed alpha
Helix 111	AM3	B	72	79	Right-handed alpha
Helix 112	AM4	B	100	106	Right-handed alpha
Helix 113	AM5	B	107	125	Right-handed alpha
Helix 114	AM6	B	142	157	Right-handed alpha
Helix 115	AM7	B	180	193	Right-handed alpha
Helix 116	AM8	B	203	214	Right-handed alpha
Helix 117	AM9	B	221	242	Right-handed alpha
Helix 118	AN1	B	251	256	Right-handed alpha
Helix 119	AN2	B	284	291	Right-handed alpha
Helix 120	AN3	B	322	336	Right-handed alpha
Helix 121	AN4	B	373	386	Right-handed alpha
Helix 122	AN5	B	394	399	Right-handed alpha
Helix 123	AN6	B	403	426	Right-handed alpha
Helix 124	AN7	C	10	28	Right-handed alpha
Helix 125	AN8	C	72	79	Right-handed alpha
Helix 126	AN9	C	100	106	Right-handed alpha
Helix 127	AO1	C	107	125	Right-handed alpha
Helix 128	AO2	C	142	157	Right-handed alpha
Helix 129	AO3	C	180	193	Right-handed alpha
Helix 130	AO4	C	203	214	Right-handed alpha
Helix 131	AO5	C	221	242	Right-handed alpha
Helix 132	AO6	C	251	256	Right-handed alpha
Helix 133	AO7	C	284	291	Right-handed alpha
Helix 134	AO8	C	322	336	Right-handed alpha
Helix 135	AO9	C	373	386	Right-handed alpha
Helix 136	AP1	C	394	399	Right-handed alpha
Helix 137	AP2	C	403	426	Right-handed alpha

There are 28 sheets in PDB entry 5MJS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	92	first strand
Strand 2	A	63	67	parallel
Strand 3	A	3	9	parallel
Strand 4	A	130	138	parallel
Strand 5	A	163	169	parallel
Strand 6	A	198	202	parallel
Strand 7	A	263	265	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	52	first strand
Strand 2	A	60	61	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	270	first strand
Strand 2	A	362	368	anti-parallel
Strand 3	A	312	318	anti-parallel
Strand 4	A	348	353	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	8	first strand
Strand 2	E	139	142	parallel
Strand 3	E	170	173	parallel
Strand 4	E	204	206	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	57	59	first strand
Strand 2	E	65	67	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	71	72	first strand
Strand 2	E	96	97	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	275	277	first strand
Strand 2	E	377	385	anti-parallel
Strand 3	E	316	325	anti-parallel
Strand 4	E	355	360	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	8	first strand
Strand 2	F	139	142	parallel
Strand 3	F	170	173	parallel
Strand 4	F	204	206	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	57	59	first strand
Strand 2	F	65	67	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	71	72	first strand
Strand 2	F	96	97	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	275	277	first strand
Strand 2	F	377	385	anti-parallel
Strand 3	F	316	325	anti-parallel
Strand 4	F	355	360	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	6	8	first strand
Strand 2	G	139	142	parallel
Strand 3	G	170	173	parallel
Strand 4	G	204	206	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	57	59	first strand
Strand 2	G	65	67	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	71	72	first strand
Strand 2	G	96	97	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	275	277	first strand
Strand 2	G	377	385	anti-parallel
Strand 3	G	316	325	anti-parallel
Strand 4	G	355	360	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	8	first strand
Strand 2	H	139	142	parallel
Strand 3	H	170	173	parallel
Strand 4	H	204	206	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	65	67	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	71	72	first strand
Strand 2	H	96	97	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	275	277	first strand
Strand 2	H	377	385	anti-parallel
Strand 3	H	316	325	anti-parallel
Strand 4	H	355	360	parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	91	92	first strand
Strand 2	J	63	67	parallel
Strand 3	J	3	9	parallel
Strand 4	J	130	138	parallel
Strand 5	J	163	169	parallel
Strand 6	J	198	202	parallel
Strand 7	J	263	265	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	51	52	first strand
Strand 2	J	60	61	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	268	270	first strand
Strand 2	J	362	368	anti-parallel
Strand 3	J	312	318	anti-parallel
Strand 4	J	348	353	parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	92	first strand
Strand 2	B	63	67	parallel
Strand 3	B	3	9	parallel
Strand 4	B	130	138	parallel
Strand 5	B	163	169	parallel
Strand 6	B	198	202	parallel
Strand 7	B	263	265	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	52	first strand
Strand 2	B	60	61	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	268	270	first strand
Strand 2	B	362	368	anti-parallel
Strand 3	B	312	318	anti-parallel
Strand 4	B	348	353	parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	92	first strand
Strand 2	C	63	67	parallel
Strand 3	C	3	9	parallel
Strand 4	C	130	138	parallel
Strand 5	C	163	169	parallel
Strand 6	C	198	202	parallel
Strand 7	C	263	265	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	52	first strand
Strand 2	C	60	61	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	268	270	first strand
Strand 2	C	362	368	anti-parallel
Strand 3	C	312	318	anti-parallel
Strand 4	C	348	353	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MJS

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MJS