Analysis of interatomic Contacts of Structural Units in PDB entry:
5MJV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MJV entry

There are 4 chains in PDB entry 5MJV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 25	THR 216
B	MET 15	GLN 253
C	VAL 32	ASP 288
D	G 1	U 6

There are 18 helices in PDB entry 5MJV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	31	Right-handed 310
Helix 2	AA2	A	35	39	Right-handed 310
Helix 3	AA3	A	67	72	Right-handed alpha
Helix 4	AA4	A	99	107	Right-handed 310
Helix 5	AA5	A	137	141	Right-handed 310
Helix 6	AA6	A	142	147	Right-handed alpha
Helix 7	AA7	B	39	44	Right-handed alpha
Helix 8	AA8	B	60	64	Right-handed 310
Helix 9	AA9	B	72	77	Right-handed alpha
Helix 10	AB1	B	118	121	Right-handed 310
Helix 11	AB2	B	122	130	Right-handed alpha
Helix 12	AB3	C	37	48	Right-handed alpha
Helix 13	AB4	C	109	114	Right-handed alpha
Helix 14	AB5	C	115	117	Right-handed 310
Helix 15	AB6	C	142	147	Right-handed 310
Helix 16	AB7	C	153	158	Right-handed alpha
Helix 17	AB8	C	189	195	Right-handed alpha
Helix 18	AB9	C	203	207	Right-handed 310

There are 11 sheets in PDB entry 5MJV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	34	first strand
Strand 2	B	186	191	anti-parallel
Strand 3	B	139	146	anti-parallel
Strand 4	B	227	236	anti-parallel
Strand 5	B	80	81	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	34	first strand
Strand 2	B	186	191	anti-parallel
Strand 3	B	139	146	anti-parallel
Strand 4	B	227	236	anti-parallel
Strand 5	B	99	103	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	83	first strand
Strand 2	A	193	204	anti-parallel
Strand 3	A	112	121	anti-parallel
Strand 4	A	156	161	anti-parallel
Strand 5	B	47	48	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	93	first strand
Strand 2	A	178	185	anti-parallel
Strand 3	A	126	132	anti-parallel
Strand 4	A	149	152	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	110	first strand
Strand 2	A	170	171	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	117	first strand
Strand 2	B	208	219	anti-parallel
Strand 3	B	152	161	anti-parallel
Strand 4	B	175	180	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	200	201	first strand
Strand 2	B	134	136	anti-parallel
Strand 3	B	241	242	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	74	first strand
Strand 2	C	77	81	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	126	first strand
Strand 2	C	261	271	anti-parallel
Strand 3	C	166	173	anti-parallel
Strand 4	C	219	224	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	135	141	first strand
Strand 2	C	241	252	anti-parallel
Strand 3	C	180	188	anti-parallel
Strand 4	C	209	213	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	163	first strand
Strand 2	C	233	234	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MJV

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MJV