Analysis of interatomic Contacts of Structural Units in PDB entry:
5MJY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MJY entry

There are 6 chains in PDB entry 5MJY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 4VAL 361
B
 MET 1VAL 361
C
 MET 1LEU 360
D
 VAL 4VAL 361
E
 GLU 2GLN 21
F
 GLU 2GLN 21
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 5MJY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 35Right-handed alpha
Helix 2
AA2
A
38 57Right-handed alpha
Helix 3
AA3
A
61 82Right-handed alpha
Helix 4
AA4
A
109 132Right-handed alpha
Helix 5
AA5
A
136 161Right-handed alpha
Helix 6
AA6
A
166 169Right-handed 310
Helix 7
AA7
A
170 196Right-handed alpha
Helix 8
AA8
A
199 222Right-handed alpha
Helix 9
AA9
A
223 231Right-handed alpha
Helix 10
AB1
A
231 264Right-handed alpha
Helix 11
AB2
A
265 287Right-handed alpha
Helix 12
AB3
A
291 319Right-handed alpha
Helix 13
AB4
A
348 353Right-handed alpha
Helix 14
AB5
B
21 35Right-handed alpha
Helix 15
AB6
B
37 40Right-handed 310
Helix 16
AB7
B
41 57Right-handed alpha
Helix 17
AB8
B
61 82Right-handed alpha
Helix 18
AB9
B
109 132Right-handed alpha
Helix 19
AC1
B
136 161Right-handed alpha
Helix 20
AC2
B
166 169Right-handed 310
Helix 21
AC3
B
170 196Right-handed alpha
Helix 22
AC4
B
199 222Right-handed alpha
Helix 23
AC5
B
223 231Right-handed alpha
Helix 24
AC6
B
231 263Right-handed alpha
Helix 25
AC7
B
265 287Right-handed alpha
Helix 26
AC8
B
291 319Right-handed alpha
Helix 27
AC9
B
326 330Right-handed 310
Helix 28
AD1
B
348 353Right-handed alpha
Helix 29
AD2
C
21 35Right-handed alpha
Helix 30
AD3
C
37 40Right-handed 310
Helix 31
AD4
C
41 57Right-handed alpha
Helix 32
AD5
C
61 82Right-handed alpha
Helix 33
AD6
C
109 132Right-handed alpha
Helix 34
AD7
C
136 161Right-handed alpha
Helix 35
AD8
C
166 169Right-handed 310
Helix 36
AD9
C
170 196Right-handed alpha
Helix 37
AE1
C
199 223Right-handed alpha
Helix 38
AE2
C
223 231Right-handed alpha
Helix 39
AE3
C
231 263Right-handed alpha
Helix 40
AE4
C
265 287Right-handed alpha
Helix 41
AE5
C
291 319Right-handed alpha
Helix 42
AE6
C
326 330Right-handed 310
Helix 43
AE7
C
348 353Right-handed alpha
Helix 44
AE8
D
22 35Right-handed alpha
Helix 45
AE9
D
37 40Right-handed 310
Helix 46
AF1
D
41 57Right-handed alpha
Helix 47
AF2
D
61 82Right-handed alpha
Helix 48
AF3
D
109 132Right-handed alpha
Helix 49
AF4
D
136 161Right-handed alpha
Helix 50
AF5
D
166 169Right-handed 310
Helix 51
AF6
D
170 196Right-handed alpha
Helix 52
AF7
D
199 222Right-handed alpha
Helix 53
AF8
D
223 231Right-handed alpha
Helix 54
AF9
D
231 263Right-handed alpha
Helix 55
AG1
D
265 287Right-handed alpha
Helix 56
AG2
D
291 319Right-handed alpha
Helix 57
AG3
D
326 330Right-handed 310
Helix 58
AG4
D
348 353Right-handed alpha
Helix 59
AG5
E
3 21Right-handed alpha
Helix 60
AG6
F
3 21Right-handed alpha
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There are 4 sheets in PDB entry 5MJY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 20first strand
Strand 2
A
94 97anti-parallel
Strand 3
A
104 107anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 97first strand
Strand 2
B
104 107anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
94 97first strand
Strand 2
C
104 107anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
17 20first strand
Strand 2
D
94 97anti-parallel
Strand 3
D
104 107anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il