Analysis of interatomic Contacts of Structural Units in PDB entry:
5MK2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MK2 entry

There are 3 chains in PDB entry 5MK2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 361
B
 MET 1VAL 361
C
 ASP 212GLY 222
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5MK2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 34Right-handed alpha
Helix 2
AA2
A
41 57Right-handed alpha
Helix 3
AA3
A
61 82Right-handed alpha
Helix 4
AA4
A
109 132Right-handed alpha
Helix 5
AA5
A
136 161Right-handed alpha
Helix 6
AA6
A
166 169Right-handed 310
Helix 7
AA7
A
170 196Right-handed alpha
Helix 8
AA8
A
199 222Right-handed alpha
Helix 9
AA9
A
223 231Right-handed alpha
Helix 10
AB1
A
231 263Right-handed alpha
Helix 11
AB2
A
265 287Right-handed alpha
Helix 12
AB3
A
291 319Right-handed alpha
Helix 13
AB4
A
348 353Right-handed alpha
Helix 14
AB5
B
22 35Right-handed alpha
Helix 15
AB6
B
41 57Right-handed alpha
Helix 16
AB7
B
61 80Right-handed alpha
Helix 17
AB8
B
109 132Right-handed alpha
Helix 18
AB9
B
136 161Right-handed alpha
Helix 19
AC1
B
166 169Right-handed 310
Helix 20
AC2
B
170 196Right-handed alpha
Helix 21
AC3
B
199 222Right-handed alpha
Helix 22
AC4
B
223 231Right-handed alpha
Helix 23
AC5
B
231 263Right-handed alpha
Helix 24
AC6
B
265 287Right-handed alpha
Helix 25
AC7
B
291 319Right-handed alpha
Helix 26
AC8
B
326 330Right-handed 310
Helix 27
AC9
B
348 353Right-handed alpha
Helix 28
AD1
C
213 222Right-handed alpha
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There are 2 sheets in PDB entry 5MK2. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 20first strand
Strand 2
A
94 97anti-parallel
Strand 3
A
104 107anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 20first strand
Strand 2
B
94 97anti-parallel
Strand 3
B
104 107anti-parallel
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