Analysis of interatomic Contacts of Structural Units in PDB entry:
5MK5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MK5 entry

There are 4 chains in PDB entry 5MK5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 364VAL 414
B
 ASP 362GLU 413
C
 ASP 362GLU 413
D
 GLN 365THR 412
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 5MK5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
364 385Right-handed alpha
Helix 2
AA2
A
387 392Right-handed alpha
Helix 3
AA3
A
396 412Right-handed alpha
Helix 4
AA4
B
363 385Right-handed alpha
Helix 5
AA5
B
387 392Right-handed alpha
Helix 6
AA6
B
396 412Right-handed alpha
Helix 7
AA7
C
363 384Right-handed alpha
Helix 8
AA8
C
387 392Right-handed alpha
Helix 9
AA9
C
396 412Right-handed alpha
Helix 10
AB1
D
366 386Right-handed alpha
Helix 11
AB2
D
387 392Right-handed alpha
Helix 12
AB3
D
396 411Right-handed alpha
Back to top of page
There are no sheets in PDB entry 5MK5
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il