Analysis of interatomic Contacts of Structural Units in PDB entry:
5MK8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MK8 entry

There are 2 chains in PDB entry 5MK8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 862	LEU 1288
B	LYS 862	SER 1287

There are 8 helices in PDB entry 5MK8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	919	923	Right-handed 310
Helix 2	AA2	A	1072	1083	Right-handed alpha
Helix 3	AA3	A	1202	1206	Right-handed 310
Helix 4	AA4	A	1257	1263	Right-handed alpha
Helix 5	AA5	B	919	923	Right-handed 310
Helix 6	AA6	B	1072	1084	Right-handed alpha
Helix 7	AA7	B	1202	1206	Right-handed 310
Helix 8	AA8	B	1259	1263	Right-handed 310

There are 14 sheets in PDB entry 5MK8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	877	880	first strand
Strand 2	A	865	872	anti-parallel
Strand 3	A	1058	1067	anti-parallel
Strand 4	A	904	907	anti-parallel
Strand 5	A	895	896	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	877	880	first strand
Strand 2	A	865	872	anti-parallel
Strand 3	A	1058	1067	anti-parallel
Strand 4	A	931	938	anti-parallel
Strand 5	A	1007	1013	anti-parallel
Strand 6	A	1018	1023	anti-parallel
Strand 7	A	1026	1032	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	887	890	first strand
Strand 2	A	914	917	anti-parallel
Strand 3	A	1044	1050	anti-parallel
Strand 4	A	950	957	anti-parallel
Strand 5	A	960	969	anti-parallel
Strand 6	A	972	980	anti-parallel
Strand 7	A	986	994	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	925	926	first strand
Strand 2	A	1039	1040	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1114	1117	first strand
Strand 2	A	1126	1129	anti-parallel
Strand 3	A	1250	1256	anti-parallel
Strand 4	A	1238	1247	anti-parallel
Strand 5	A	1229	1232	anti-parallel
Strand 6	A	1212	1215	anti-parallel
Strand 7	A	1171	1178	anti-parallel
Strand 8	A	1181	1186	anti-parallel
Strand 9	A	1199	1201	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1196	1197	first strand
Strand 2	A	1250	1256	anti-parallel
Strand 3	A	1238	1247	anti-parallel
Strand 4	A	1229	1232	anti-parallel
Strand 5	A	1212	1215	anti-parallel
Strand 6	A	1171	1178	anti-parallel
Strand 7	A	1151	1156	anti-parallel
Strand 8	A	1102	1107	anti-parallel
Strand 9	A	1274	1277	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1134	1137	first strand
Strand 2	A	1141	1144	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	877	880	first strand
Strand 2	B	865	872	anti-parallel
Strand 3	B	1058	1067	anti-parallel
Strand 4	B	904	907	anti-parallel
Strand 5	B	895	896	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	877	880	first strand
Strand 2	B	865	872	anti-parallel
Strand 3	B	1058	1067	anti-parallel
Strand 4	B	931	938	anti-parallel
Strand 5	B	1007	1013	anti-parallel
Strand 6	B	1018	1023	anti-parallel
Strand 7	B	1026	1032	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	887	890	first strand
Strand 2	B	914	917	anti-parallel
Strand 3	B	1044	1050	anti-parallel
Strand 4	B	950	957	anti-parallel
Strand 5	B	960	969	anti-parallel
Strand 6	B	972	980	anti-parallel
Strand 7	B	986	994	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	925	926	first strand
Strand 2	B	1039	1040	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1114	1117	first strand
Strand 2	B	1126	1129	anti-parallel
Strand 3	B	1250	1256	anti-parallel
Strand 4	B	1238	1247	anti-parallel
Strand 5	B	1229	1232	anti-parallel
Strand 6	B	1212	1215	anti-parallel
Strand 7	B	1171	1178	anti-parallel
Strand 8	B	1181	1186	anti-parallel
Strand 9	B	1199	1201	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1196	1197	first strand
Strand 2	B	1250	1256	anti-parallel
Strand 3	B	1238	1247	anti-parallel
Strand 4	B	1229	1232	anti-parallel
Strand 5	B	1212	1215	anti-parallel
Strand 6	B	1171	1178	anti-parallel
Strand 7	B	1152	1156	anti-parallel
Strand 8	B	1102	1107	anti-parallel
Strand 9	B	1274	1277	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1134	1137	first strand
Strand 2	B	1141	1144	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MK8

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MK8